FvH4_6g39470

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001730
Physical Location & Seq
Reverse (-)
31160681 .. 31165677
4997 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39470.t1

Sequence Viewer

Length: 1026 bp
ATGGCGGAGGTTGCTTCTGAGCCCAAAGATACTTGTGCCACCACCACCACCACCGCCACAAGTAGGAATTCCGATCCCGATGAGAATCGTCCCGTCCGTGTCTACGCTGATGGGATCTACGATCTCTTCCACTTTGGCCATGCTCGCTCTCTCGAGCAAGCCAAATTATCGTTCCCTAATACCTATTTGCTCGTTGGTGTTTGCAATGATGATACCACTCACAAGTTTAAAGGGAAGACTGTTATGACGGAGTCGGAACGATATGAATCTCTTCGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAATCAATCAAGAATTTCTTGACAAGCATAATATTGATTATGTAGCCCATGACTCTCTACCTTATGCTGATACTAGTGGAGCCGGAAAGGACGTATACGAATTTGTCAAAAAAGTTGGCAGGTTTAAGGAGACAAAACGAACCGAGGGGATCTCGACATCAGACATTATAATGAGGATTGTTAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGGTATTCTAGAAAAGAGCTTGGCGTTAGTTTCGTGAAGGAAAAACGATTGAGGGTGAACATGAGTTTGAAGAAGTTACAGGAGAAAGTGAAGGAACACCAAGAAAAAGTAGGCGAAAAGATTCAGACAGTTGCTATGCATCGTAATGAATGGGTAGAAAATGCTGATCGCTGGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACTGCCATTAGAGATCGAATTCAAGAGCGCTTAAGAGGGCAGCAGTCAGCACGTCTGCTGGAGAATGGTGAGGTAGTTACTGATGATGAAGAATATTATGATGATGAAGATGAAGAATATAACGATGATGAAGAATATTATGATGATGAAGAATATTATGAAGAGGTGTATGGGAAAGACTCAAATAATGAGAATGAGGGCAATGATAGAGGACGAAGTGAGAAAGAAAAGTACGAGAAAGAAAATAATGACAAAGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

342

Amino Acids

39.94

Weight (kDa)

4.92

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 35 - 164 2.7e-32 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 488, 510
Acc36I ACCTGC 1 cut(s) 429
AccB7I CCANNNNNTGG 1 cut(s) 757
AccI GTMKAC 2 cut(s) 102, 414
AciI CCGC 2 cut(s) 5, 54
AclWI GGATC 4 cut(s) 68, 122, 476, 543
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 4 cut(s) 67, 332, 419, 780
AfaI GTAC 1 cut(s) 995
AfeI AGCGCT 1 cut(s) 791
AfiI CCNNNNNNNGG 2 cut(s) 63, 757
AflII CTTAAG 1 cut(s) 793
AgsI TTSAA 3 cut(s) 610, 740, 785
AhlI ACTAGT 1 cut(s) 392
AjiI CACGTC 1 cut(s) 815
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 559
AluI AGCT 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 4 cut(s) 68, 122, 476, 543
Ama87I CYCGRG 1 cut(s) 152
Aor51HI AGCGCT 1 cut(s) 791
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 802
ApoI RAATTY 4 cut(s) 67, 332, 419, 780
Asp700I GAANNNNTTC 3 cut(s) 270, 300, 660
AspLEI GCGC 1 cut(s) 792
AsuHPI GGTGA 2 cut(s) 607, 842
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 764
BalI TGGCCA 1 cut(s) 138
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 814
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 443
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 2 cut(s) 393, 549
BfoI RGCGCY 1 cut(s) 793
BfrI CTTAAG 1 cut(s) 793
BfuAI ACCTGC 1 cut(s) 429
BisI GCNGC 1 cut(s) 803
BlsI GCNGC 1 cut(s) 804
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 815
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 298, 688
BpiI GAAGAC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 1 cut(s) 842
BpuEI CTTGAG 1 cut(s) 749
BsaBI GATNNNNATC 2 cut(s) 84, 265
BsaJI CCNNGG 3 cut(s) 314, 315, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 757
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 3 cut(s) 211, 277, 970
Bse8I GATNNNNATC 2 cut(s) 84, 265
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 314, 315, 462
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 2 cut(s) 84, 265
BseLI CCNNNNNNNGG 2 cut(s) 63, 757
BseMI GCAATG 3 cut(s) 211, 277, 970
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 514
BseSI GKGCMC 1 cut(s) 764
BseXI GCAGC 1 cut(s) 814
BseYI CCCAGC 1 cut(s) 711
BshFI GGCC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 63, 757
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 24, 764
Bsp143I GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
BspACI CCGC 2 cut(s) 5, 54
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 4 cut(s) 68, 122, 476, 543
BspTI CTTAAG 1 cut(s) 793
BsrDI GCAATG 3 cut(s) 211, 277, 970
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 3 cut(s) 314, 315, 462
BssMI GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
BssNAI GTATAC 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 241, 670
Bst6I CTCTTC 3 cut(s) 131, 276, 918
BstAFI CTTAAG 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 145, 159
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 793
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 7 cut(s) 76, 117, 124, 471, 538, 709, 778
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
BstMWI GCNNNNNNNGC 2 cut(s) 11, 144
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 764
BstV1I GCAGC 1 cut(s) 814
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 2 cut(s) 114, 468
BstYI RGATCY 2 cut(s) 114, 468
BstZ17I GTATAC 1 cut(s) 415
BsuRI GGCC 1 cut(s) 138
BtrI CACGTC 1 cut(s) 815
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 145, 159
CfoI GCGC 1 cut(s) 792
Csp6I GTAC 1 cut(s) 994
CviAII CATG 3 cut(s) 140, 368, 601
CviJI RGCY 6 cut(s) 22, 138, 161, 365, 401, 559
CviKI_1 RGCY 6 cut(s) 22, 138, 161, 365, 401, 559
CviQI GTAC 1 cut(s) 994
DdeI CTNAG 1 cut(s) 18
DpnI GATC 7 cut(s) 75, 116, 123, 470, 537, 708, 777
DpnII GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
DraI TTTAAA 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 131, 276, 918
EarI CTCTTC 3 cut(s) 131, 276, 918
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 791
Eco88I CYCGRG 1 cut(s) 152
EcoRI GAATTC 2 cut(s) 67, 780
EcoRII CCWGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 3 cut(s) 143, 371, 604
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 75
FatI CATG 3 cut(s) 139, 367, 600
FblI GTMKAC 2 cut(s) 102, 414
Fnu4HI GCNGC 1 cut(s) 803
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 803
FspBI CTAG 2 cut(s) 393, 549
GlaI GCGC 1 cut(s) 791
GluI GCNGC 1 cut(s) 803
GsaI CCCAGC 1 cut(s) 715
GsuI CTGGAG 1 cut(s) 842
HaeII RGCGCY 1 cut(s) 793
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 402
HhaI GCGC 1 cut(s) 792
Hin1II CATG 3 cut(s) 143, 371, 604
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HinfI GANTC 6 cut(s) 85, 251, 266, 371, 661, 941
HpaII CCGG 1 cut(s) 402
HphI GGTGA 2 cut(s) 607, 842
Hpy166II GTNNAC 3 cut(s) 103, 415, 598
Hpy188I TCNGA 5 cut(s) 19, 73, 256, 481, 666
Hpy8I GTNNAC 3 cut(s) 103, 415, 598
HpyAV CCTTC 3 cut(s) 571, 625, 737
HpyCH4III ACNGT 2 cut(s) 241, 670
HpyCH4IV ACGT 2 cut(s) 411, 814
HpyCH4V TGCA 4 cut(s) 204, 282, 311, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 144
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 411, 814
Hsp92II CATG 3 cut(s) 143, 371, 604
HspAI GCGC 1 cut(s) 790
Kzo9I GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 2 cut(s) 298, 688
MaeI CTAG 2 cut(s) 393, 549
MaeII ACGT 2 cut(s) 411, 814
MaeIII GTNAC 3 cut(s) 527, 615, 838
MalI GATC 7 cut(s) 75, 116, 123, 470, 537, 708, 777
MboI GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
MflI RGATCY 2 cut(s) 114, 468
MhlI GDGCHC 2 cut(s) 24, 764
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 5 cut(s) 67, 164, 332, 419, 780
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 3 cut(s) 260, 365, 935
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 8 cut(s) 457, 486, 585, 791, 826, 919, 952, 965
Mox20I TGGCCA 1 cut(s) 138
Mph1103I ATGCAT 1 cut(s) 681
MroXI GAANNNNTTC 3 cut(s) 270, 300, 660
MscI TGGCCA 1 cut(s) 138
MseI TTAA 4 cut(s) 228, 444, 501, 794
MslI CAYNNNNRTG 2 cut(s) 488, 684
Msp20I TGGCCA 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 793
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 11, 144
NdeII GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
NlaIII CATG 3 cut(s) 143, 371, 604
NlaIV GGNNCC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 152
PasI CCCWGGG 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 3 cut(s) 270, 300, 660
PfeI GAWTC 3 cut(s) 85, 266, 661
PflFI GACNNNGTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 757
PkrI GCNGC 1 cut(s) 804
PleI GAGTC 3 cut(s) 259, 365, 935
PpsI GAGTC 3 cut(s) 259, 365, 935
PsiI TTATAA 2 cut(s) 488, 510
Psp6I CCWGG 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 711
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 400
PsuI RGATCY 2 cut(s) 114, 468
PsyI GACNNNGTC 1 cut(s) 250
RsaI GTAC 1 cut(s) 995
RsaNI GTAC 1 cut(s) 994
RseI CAYNNNNRTG 2 cut(s) 488, 684
SaqAI TTAA 4 cut(s) 228, 444, 501, 794
SatI GCNGC 1 cut(s) 803
Sau3AI GATC 7 cut(s) 73, 114, 121, 468, 535, 706, 775
SchI GAGTC 3 cut(s) 260, 365, 935
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 2 cut(s) 24, 764
SfaNI GCATC 2 cut(s) 298, 688
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 488, 684
SmlI CTYRAG 3 cut(s) 152, 728, 793
SmoI CTYRAG 3 cut(s) 152, 728, 793
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 5 cut(s) 67, 164, 332, 419, 780
SsiI CCGC 2 cut(s) 5, 54
SspI AATATT 4 cut(s) 352, 857, 899, 917
SspMI CTAG 2 cut(s) 393, 549
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 241, 670
TaiI ACGT 2 cut(s) 414, 817
TaqI TCGA 3 cut(s) 153, 473, 778
TasI AATT 5 cut(s) 67, 164, 332, 419, 780
TfiI GAWTC 3 cut(s) 85, 266, 661
Tru1I TTAA 4 cut(s) 228, 444, 501, 794
Tru9I TTAA 4 cut(s) 228, 444, 501, 794
TscAI CASTG 1 cut(s) 769
TseI GCWGC 1 cut(s) 802
TspDTI ATGAA 9 cut(s) 279, 309, 702, 864, 882, 888, 906, 924, 936
TspGWI ACGGA 2 cut(s) 86, 263
TspRI CASTG 1 cut(s) 769
Tth111I GACNNNGTC 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 793
XapI RAATTY 4 cut(s) 67, 332, 419, 780
XbaI TCTAGA 1 cut(s) 548
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 2 cut(s) 102, 414
XmnI GAANNNNTTC 3 cut(s) 270, 300, 660
XspI CTAG 2 cut(s) 393, 549
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.