Rroxscaffold_2G00123210

Choline-phosphate cytidylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
56964795 .. 56966317
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123210.1

Sequence Viewer

Length: 387 bp
ATGTCGGCTTCAATGAAAGAGTTTGATTCAACTCGGTGGGTGCTCGACTCCAACCAGCTCGGTAAGCTTCTCTCTATCCTCAATCTGTTTGAACTCTTAACTCCGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGGCGGAGTCTCGAACGATATGTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.68

Weight (kDa)

9.55

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 330
Acc36I ACCTGC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 364
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 3 cut(s) 12, 30, 92
AluBI AGCT 2 cut(s) 58, 67
AluI AGCT 2 cut(s) 58, 67
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 192, 263
AlwI GGATC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 192, 263
BfaI CTAG 3 cut(s) 213, 222, 368
BfuAI ACCTGC 1 cut(s) 249
BmsI GCATC 2 cut(s) 133, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 145
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 192, 263
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 334
BssMI GATC 1 cut(s) 355
BssNAI GTATAC 1 cut(s) 365
Bst1107I GTATAC 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 175, 384
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 192, 263
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 64, 218
BstZ17I GTATAC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 249
CviJI RGCY 5 cut(s) 8, 58, 67, 221, 251
CviKI_1 RGCY 5 cut(s) 8, 58, 67, 221, 251
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DraI TTTAAA 1 cut(s) 163
EciI GGCGGA 1 cut(s) 197
Eco32I GATATC 1 cut(s) 291
EcoRV GATATC 1 cut(s) 291
FaiI YATR 9 cut(s) 179, 199, 204, 235, 237, 308, 330, 339, 365
FblI GTMKAC 1 cut(s) 364
FokI GGATG 1 cut(s) 242
FspBI CTAG 3 cut(s) 213, 222, 368
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 3 cut(s) 26, 47, 185
Hpy166II GTNNAC 1 cut(s) 365
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 175, 384
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 218
HpyF3I CTNAG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 355
LpnPI CCDG 3 cut(s) 68, 244, 347
LweI GCATC 2 cut(s) 133, 199
MaeI CTAG 3 cut(s) 213, 222, 368
MaeIII GTNAC 1 cut(s) 347
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 239
MlyI GAGTC 2 cut(s) 41, 194
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 89, 277, 306
MseI TTAA 3 cut(s) 98, 162, 264
MslI CAYNNNNRTG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 64, 218
NdeII GATC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 2 cut(s) 41, 193
PpsI GAGTC 2 cut(s) 41, 193
PsiI TTATAA 2 cut(s) 308, 330
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 98, 162, 264
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 2 cut(s) 41, 194
SduI GDGCHC 1 cut(s) 45
SetI ASST 4 cut(s) 60, 69, 119, 263
SfaNI GCATC 2 cut(s) 133, 199
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 182
SspMI CTAG 3 cut(s) 213, 222, 368
TaaI ACNGT 2 cut(s) 175, 384
TaqI TCGA 4 cut(s) 45, 190, 293, 299
TasI AATT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 98, 162, 264
Tru9I TTAA 3 cut(s) 98, 162, 264
TspDTI ATGAA 2 cut(s) 29, 252
TspGWI ACGGA 1 cut(s) 93
XapI RAATTY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 3 cut(s) 213, 222, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.