Prupe.4G116200_v2.0.a1

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001730
Physical Location & Seq
Forward (+)
6282360 .. 6286714
4355 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G116200.1

Sequence Viewer

Length: 852 bp
ATGATGGAGGATCAGAAGCAGAATAGTGAGGAGCGACCAGTGAGAGTATATGCAGATGGCATATATGATCTCTTTCACTTTGGGCATGCTGGTTCTCTCGAGCAAGCCAAGAAGCTGTTCCCAAACACGTACCTGCTTGTTGGCTGCTGCAATGATGAAACTACCCACAATTATAAGGGCAAAACTGTTATGACCGAGAAGGAGCGCTATGAGTCACTCCGCCATTGCAGATGGGTGGATGAAGTTATTCCCGATGCACCATGGGTGCTCTCGCAAGAGTTTCTTGACAAGCATCAGATTGACTATGTGGCACATGACTCTCTTCCTTATGCTGATGCAAGTGGGTCTGGAAAGGATGTCTATGACTTTGTTAAGTCCGTTGGAAAGTTTAAGGAAACAAAACGGACTGATGGGATTTCTACATCAGATATCATAATGAGGATTGTTAAAGATTACAACCAGTATGTGATGCGTAATTTGGACCGTGGGTACACAAGAAAGGAGCTAGGTGTTAGCTATGTGAGGGAAAAGCGACTGAGAGTGAACATGGGACTGAAAAGACTGCGTGAGAGGGTGAAGGAGCACCAAGAAAAAGTAGGAGAGAAGATACAGATAGTAACAAAGACTGCTACAATGCGTCGTAATGAATGGGTGGAGAATGCTGATCGATTGGTTGCTGGATTTCTTGAGAGGTTTGAAGAAGGTTTCCACAAAATGGGAACAGCCATAAGGGACCAAATTCAAGAGCGAATAAGGAAGCGGCAGTTCGGAGGCCTTTTATATGAAGAAGATGATGATGATGAGTTCTATGACGACTCTGAAGACGAACGCAATGATGAAGACGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

284

Amino Acids

33.45

Weight (kDa)

5.53

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 715
AciI CCGC 2 cut(s) 220, 760
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 738
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 2 cut(s) 131, 491
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 715
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 698, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 3 cut(s) 115, 505, 516
AluI AGCT 3 cut(s) 115, 505, 516
Alw21I GWGCWC 2 cut(s) 270, 585
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 1 cut(s) 772
ApeKI GCWGC 2 cut(s) 144, 147
ApoI RAATTY 1 cut(s) 738
Asp700I GAANNNNTTC 2 cut(s) 116, 246
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 481, 733
AsuHPI GGTGA 1 cut(s) 586
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 2 cut(s) 481, 733
BbsI GAAGAC 2 cut(s) 828, 846
Bbv12I GWGCWC 2 cut(s) 270, 585
BbvI GCAGC 2 cut(s) 131, 134
BccI CCATC 3 cut(s) 50, 225, 404
BfaI CTAG 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 3 cut(s) 145, 148, 761
BlsI GCNGC 3 cut(s) 146, 149, 762
Bme18I GGWCC 2 cut(s) 481, 733
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 481, 733
BmiI GGNNCC 1 cut(s) 734
BmsI GCATC 4 cut(s) 244, 301, 325, 459
BpiI GAAGAC 2 cut(s) 828, 846
BpuEI CTTGAG 1 cut(s) 707
Bsa29I ATCGAT 1 cut(s) 667
BsaAI YACGTR 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 260, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse1I ACTGG 2 cut(s) 38, 460
Bse3DI GCAATG 3 cut(s) 157, 223, 838
BseCI ATCGAT 1 cut(s) 667
BseDI CCNNGG 2 cut(s) 260, 484
BseGI GGATG 2 cut(s) 244, 361
BseLI CCNNNNNNNGG 1 cut(s) 715
BseMI GCAATG 3 cut(s) 157, 223, 838
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 2 cut(s) 38, 460
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 131, 134
BshFI GGCC 1 cut(s) 774
BshVI ATCGAT 1 cut(s) 667
BsiHKAI GWGCWC 2 cut(s) 270, 585
BsiHKCI CYCGRG 1 cut(s) 98
BslFI GGGAC 2 cut(s) 564, 746
BslI CCNNNNNNNGG 1 cut(s) 715
BsmFI GGGAC 2 cut(s) 564, 746
BsmI GAATGC 1 cut(s) 664
BsnI GGCC 1 cut(s) 774
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 270, 585
Bsp143I GATC 3 cut(s) 10, 67, 664
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 2 cut(s) 220, 760
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 1 cut(s) 528
BspDI ATCGAT 1 cut(s) 667
BspLI GGNNCC 1 cut(s) 734
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 157, 223, 838
BsrI ACTGG 2 cut(s) 38, 460
BssECI CCNNGG 2 cut(s) 260, 484
BssMI GATC 3 cut(s) 10, 67, 664
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 187, 485
Bst6I CTCTTC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 87, 105
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 2 cut(s) 260, 484
BstF5I GGATG 2 cut(s) 244, 361
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 13, 70, 667
BstMBI GATC 3 cut(s) 10, 67, 664
BstNSI RCATGY 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 131, 134
BstV2I GAAGAC 2 cut(s) 828, 846
Bsu15I ATCGAT 1 cut(s) 667
BsuRI GGCC 1 cut(s) 774
BsuTUI ATCGAT 1 cut(s) 667
BtgI CCRYGG 2 cut(s) 260, 484
BtsCI GGATG 2 cut(s) 244, 361
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 87, 105
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 481, 733
ClaI ATCGAT 1 cut(s) 667
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 130, 490
CviAII CATG 4 cut(s) 86, 261, 314, 547
CviJI RGCY 7 cut(s) 107, 115, 144, 505, 516, 725, 774
CviKI_1 RGCY 7 cut(s) 107, 115, 144, 505, 516, 725, 774
CviQI GTAC 2 cut(s) 130, 490
DdeI CTNAG 1 cut(s) 536
DpnI GATC 3 cut(s) 12, 69, 666
DpnII GATC 3 cut(s) 10, 67, 664
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 774
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 481, 733
Eco47III AGCGCT 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 840
Eco88I CYCGRG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 89, 264, 317, 550
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 2 cut(s) 564, 746
FatI CATG 4 cut(s) 85, 260, 313, 546
Fnu4HI GCNGC 3 cut(s) 145, 148, 761
FokI GGATG 2 cut(s) 251, 368
Fsp4HI GCNGC 3 cut(s) 145, 148, 761
FspBI CTAG 1 cut(s) 506
GlaI GCGC 1 cut(s) 206
GluI GCNGC 3 cut(s) 145, 148, 761
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 774
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 207
Hin1II CATG 4 cut(s) 89, 264, 317, 550
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 3 cut(s) 212, 317, 815
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 492, 544
Hpy188I TCNGA 5 cut(s) 15, 297, 427, 770, 820
Hpy188III TCNNGA 6 cut(s) 98, 251, 284, 348, 686, 743
Hpy8I GTNNAC 2 cut(s) 492, 544
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 3 cut(s) 193, 571, 695
HpyCH4III ACNGT 2 cut(s) 187, 485
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 5 cut(s) 53, 150, 228, 257, 338
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 4 cut(s) 89, 264, 317, 550
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 10, 67, 664
LmnI GCTCC 4 cut(s) 31, 202, 502, 580
LpnPI CCDG 6 cut(s) 51, 75, 146, 333, 473, 663
Lsp1109I GCAGC 2 cut(s) 131, 134
LweI GCATC 4 cut(s) 244, 301, 325, 459
MaeI CTAG 1 cut(s) 506
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 213, 616
MalI GATC 3 cut(s) 12, 69, 666
MboI GATC 3 cut(s) 10, 67, 664
MboII GAAGA 7 cut(s) 314, 616, 710, 797, 800, 833, 851
MhlI GDGCHC 2 cut(s) 270, 585
MluCI AATT 3 cut(s) 169, 475, 738
MlyI GAGTC 3 cut(s) 221, 311, 809
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 6 cut(s) 22, 432, 516, 564, 684, 764
MroXI GAANNNNTTC 2 cut(s) 116, 246
MseI TTAA 3 cut(s) 372, 390, 447
Mva1269I GAATGC 1 cut(s) 664
NcoI CCATGG 1 cut(s) 260
NdeII GATC 3 cut(s) 10, 67, 664
NlaIII CATG 4 cut(s) 89, 264, 317, 550
NlaIV GGNNCC 1 cut(s) 734
NmuCI GTSAC 1 cut(s) 213
NspI RCATGY 1 cut(s) 89
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 774
PctI GAATGC 1 cut(s) 664
PdmI GAANNNNTTC 2 cut(s) 116, 246
PflMI CCANNNNNTGG 1 cut(s) 715
PkrI GCNGC 3 cut(s) 146, 149, 762
PleI GAGTC 3 cut(s) 220, 311, 809
PpsI GAGTC 3 cut(s) 220, 311, 809
Ppu21I YACGTR 1 cut(s) 129
PsiI TTATAA 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 2 cut(s) 481, 733
RsaI GTAC 2 cut(s) 131, 491
RsaNI GTAC 2 cut(s) 130, 490
SaqAI TTAA 3 cut(s) 372, 390, 447
SatI GCNGC 3 cut(s) 145, 148, 761
Sau3AI GATC 3 cut(s) 10, 67, 664
Sau96I GGNCC 2 cut(s) 481, 733
SchI GAGTC 3 cut(s) 221, 311, 809
SduI GDGCHC 2 cut(s) 270, 585
SetI ASST 8 cut(s) 117, 131, 135, 507, 511, 518, 695, 706
SfaNI GCATC 4 cut(s) 244, 301, 325, 459
Sfr274I CTCGAG 1 cut(s) 98
SinI GGWCC 2 cut(s) 481, 733
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 98, 686
SmoI CTYRAG 2 cut(s) 98, 686
SphI GCATGC 1 cut(s) 89
Sse9I AATT 3 cut(s) 169, 475, 738
SseBI AGGCCT 1 cut(s) 774
SsiI CCGC 2 cut(s) 220, 760
SspMI CTAG 1 cut(s) 506
StuI AGGCCT 1 cut(s) 774
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 187, 485
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 99, 667
TaqII GACCGA 1 cut(s) 209
TasI AATT 3 cut(s) 169, 475, 738
TauI GCSGC 1 cut(s) 763
Tru1I TTAA 3 cut(s) 372, 390, 447
Tru9I TTAA 3 cut(s) 372, 390, 447
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 2 cut(s) 144, 147
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 5 cut(s) 171, 255, 660, 798, 852
TspGWI ACGGA 2 cut(s) 367, 418
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 715
VpaK11BI GGWCC 2 cut(s) 481, 733
XapI RAATTY 1 cut(s) 738
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 98
XmnI GAANNNNTTC 2 cut(s) 116, 246
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.