RchiOBHm_Chr2g0103211

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001730
Physical Location & Seq
Reverse (-)
14797380 .. 14798605
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47757

Sequence Viewer

Length: 435 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATACCATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCGAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTATTATGACGGAGTCCGAACGGTATGAATCTCTTTGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATATCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCGTTTGAGGAGACAAGAAGAACTGAGGGGATATCGACATCGAACATTATAATGTGGATTGTAAAAGATTATAACCAGTATGTGTTGTGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGAAGAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

144

Amino Acids

16.69

Weight (kDa)

5.56

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 102 8e-14 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 68, 347, 369
AccI GTMKAC 1 cut(s) 403
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 2 cut(s) 76, 83
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 402
ApoI RAATTY 2 cut(s) 76, 83
Asp700I GAANNNNTTC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 3 cut(s) 54, 118, 217
BsaJI CCNNGG 2 cut(s) 233, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 2 cut(s) 130, 196
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 2 cut(s) 45, 217
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 2 cut(s) 130, 196
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 130, 196
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 1 cut(s) 394
BssNAI GTATAC 1 cut(s) 404
Bst1107I GTATAC 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 45, 217
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstZ17I GTATAC 1 cut(s) 404
BtsCI GGATG 2 cut(s) 45, 217
Cac8I GCNNGC 1 cut(s) 11
CviAII CATG 2 cut(s) 39, 287
CviJI RGCY 1 cut(s) 284
CviKI_1 RGCY 1 cut(s) 284
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DraI TTTAAA 1 cut(s) 148
Eco32I GATATC 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 330
FaeI CATG 2 cut(s) 42, 290
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 2 cut(s) 38, 286
FblI GTMKAC 1 cut(s) 403
FokI GGATG 2 cut(s) 32, 224
FspBI CTAG 1 cut(s) 407
Hin1II CATG 2 cut(s) 42, 290
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 170, 185, 290
Hpy166II GTNNAC 2 cut(s) 244, 404
Hpy188I TCNGA 2 cut(s) 82, 175
Hpy188III TCNNGA 2 cut(s) 224, 257
Hpy8I GTNNAC 2 cut(s) 244, 404
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 57, 123, 201, 230
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 2 cut(s) 42, 290
Kzo9I GATC 1 cut(s) 394
LpnPI CCDG 5 cut(s) 73, 220, 237, 247, 386
LweI GCATC 3 cut(s) 54, 118, 217
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 386
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 260, 327
MluCI AATT 3 cut(s) 29, 76, 83
MlyI GAGTC 2 cut(s) 179, 284
MnlI CCTC 2 cut(s) 298, 316
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
NdeII GATC 1 cut(s) 394
NlaIII CATG 2 cut(s) 42, 290
PasI CCCWGGG 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 169
PleI GAGTC 2 cut(s) 178, 284
PpsI GAGTC 2 cut(s) 178, 284
PsiI TTATAA 3 cut(s) 68, 347, 369
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 147
Sau3AI GATC 1 cut(s) 394
SchI GAGTC 2 cut(s) 179, 284
ScrFI CCNGG 1 cut(s) 235
SetI ASST 2 cut(s) 92, 104
SfaNI GCATC 3 cut(s) 54, 118, 217
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 3 cut(s) 29, 76, 83
SspI AATATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 73, 332, 338
TasI AATT 3 cut(s) 29, 76, 83
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 198, 228
TspGWI ACGGA 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 2 cut(s) 76, 83
XmiI GTMKAC 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.