Rh3AG196900

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001730
Physical Location & Seq
Reverse (-)
19200579 .. 19220980
20402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG196900.1

Sequence Viewer

Length: 597 bp
ATGGCTAGCGTGCTGGGTTCGCTGATTTCAGTAAGGGGGTCTCGGCAGGTGAATTGCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAACGGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACACAGCAATATCGCCGGTGAAACTATTAACTTTGACAGTAGCTTGAGCTTGACTCATGACTTAAAAGTCAAGCAAAACTTCAAGCTTGTTTTGTTTGACATAGAGGTAAAGGGTAAGCTTGGAAGGAAGTATTCAAGTCAAGCTGGAGTAAGTACCCAAGCTCAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

198

Amino Acids

22.39

Weight (kDa)

9.13

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 20 - 119 9.2e-14 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 353, 375
AarI CACCTGC 1 cut(s) 37
AasI GACNNNNNNGTC 1 cut(s) 491
Acc36I ACCTGC 3 cut(s) 37, 48, 294
AccI GTMKAC 1 cut(s) 409
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 2 cut(s) 197, 284
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 3 cut(s) 150, 303, 589
AgsI TTSAA 2 cut(s) 508, 561
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 6 cut(s) 468, 474, 511, 544, 569, 587
AluI AGCT 6 cut(s) 468, 474, 511, 544, 569, 587
Alw26I GTCTC 2 cut(s) 45, 308
AlwI GGATC 1 cut(s) 408
ApoI RAATTY 2 cut(s) 197, 284
Asp700I GAANNNNTTC 2 cut(s) 165, 198
AsuHPI GGTGA 2 cut(s) 61, 455
AsuNHI GCTAGC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 45, 308
BfaI CTAG 4 cut(s) 6, 258, 267, 413
BfuAI ACCTGC 3 cut(s) 37, 48, 294
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 3 cut(s) 88, 163, 244
BmtI GCTAGC 1 cut(s) 9
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 179, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 303, 589
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 179, 180
BseGI GGATG 2 cut(s) 163, 280
BseLI CCNNNNNNNGG 3 cut(s) 150, 303, 589
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 3 cut(s) 150, 303, 589
BsmAI GTCTC 2 cut(s) 45, 308
Bso31I GGTCTC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 481
BspMI ACCTGC 3 cut(s) 37, 48, 294
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 179, 180
BssMI GATC 1 cut(s) 400
BssNAI GTATAC 1 cut(s) 410
Bst1107I GTATAC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 3 cut(s) 130, 150, 464
BstC8I GCNNGC 2 cut(s) 7, 11
BstDEI CTNAG 2 cut(s) 327, 588
BstF5I GGATG 2 cut(s) 163, 280
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 2 cut(s) 45, 308
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 3 cut(s) 19, 263, 429
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstZ17I GTATAC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 163, 280
BveI ACCTGC 3 cut(s) 37, 48, 294
Cac8I GCNNGC 2 cut(s) 7, 11
CciI TCATGA 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 440
Csp6I GTAC 1 cut(s) 579
CviAII CATG 2 cut(s) 233, 482
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 327, 588
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraI TTTAAA 1 cut(s) 118
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 179
EcoRV GATATC 1 cut(s) 336
FaeI CATG 2 cut(s) 236, 485
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 488, 520
FatI CATG 2 cut(s) 232, 481
FblI GTMKAC 1 cut(s) 409
FokI GGATG 2 cut(s) 170, 287
FspBI CTAG 4 cut(s) 6, 258, 267, 413
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 591
HapII CCGG 1 cut(s) 441
Hin1II CATG 2 cut(s) 236, 485
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 509, 542
HinfI GANTC 3 cut(s) 140, 236, 478
HpaII CCGG 1 cut(s) 441
HphI GGTGA 2 cut(s) 61, 455
Hpy166II GTNNAC 2 cut(s) 190, 410
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 170, 203, 482
Hpy8I GTNNAC 2 cut(s) 190, 410
HpyAV CCTTC 1 cut(s) 543
HpyCH4III ACNGT 3 cut(s) 130, 150, 464
HpyCH4V TGCA 3 cut(s) 57, 93, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 263, 429
HpyF3I CTNAG 2 cut(s) 327, 588
Hsp92II CATG 2 cut(s) 236, 485
Kzo9I GATC 1 cut(s) 400
LweI GCATC 3 cut(s) 88, 163, 244
MaeI CTAG 4 cut(s) 6, 258, 267, 413
MaeIII GTNAC 1 cut(s) 392
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 1 cut(s) 206
MluCI AATT 3 cut(s) 52, 197, 284
MlyI GAGTC 3 cut(s) 149, 230, 472
MnlI CCTC 3 cut(s) 322, 351, 523
MroXI GAANNNNTTC 2 cut(s) 165, 198
MseI TTAA 4 cut(s) 117, 309, 453, 488
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 19, 263, 429
NdeII GATC 1 cut(s) 400
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 236, 485
NmeAIII GCCGAG 1 cut(s) 22
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 37
PasI CCCWGGG 1 cut(s) 180
PdmI GAANNNNTTC 2 cut(s) 165, 198
PflFI GACNNNGTC 1 cut(s) 139
PleI GAGTC 3 cut(s) 148, 230, 472
PpsI GAGTC 3 cut(s) 148, 230, 472
PsiI TTATAA 2 cut(s) 353, 375
Psp6I CCWGG 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 139
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 4 cut(s) 117, 309, 453, 488
Sau3AI GATC 1 cut(s) 400
SchI GAGTC 3 cut(s) 149, 230, 472
ScrFI CCNGG 1 cut(s) 181
SfaNI GCATC 3 cut(s) 88, 163, 244
SgrAI CRCCGGYG 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 3 cut(s) 52, 197, 284
SspI AATATT 1 cut(s) 217
SspMI CTAG 4 cut(s) 6, 258, 267, 413
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 130, 150, 464
TaqI TCGA 2 cut(s) 338, 344
TasI AATT 3 cut(s) 52, 197, 284
Tru1I TTAA 4 cut(s) 117, 309, 453, 488
Tru9I TTAA 4 cut(s) 117, 309, 453, 488
TspDTI ATGAA 2 cut(s) 174, 297
TspGWI ACGGA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 139
XapI RAATTY 2 cut(s) 197, 284
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 2 cut(s) 165, 198
XspI CTAG 4 cut(s) 6, 258, 267, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.