Rh3BG226900

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001730
Physical Location & Seq
Reverse (-)
20791847 .. 20793549
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG226900.1

Sequence Viewer

Length: 567 bp
ATGGACGCTGACCCCGTATTGTGCTCTGAGGAGGACGAGGACATCACCCAGGCCGTTCTAGACGGCGCCGTTCCGTTTTACTCTCTCGAATCGAAGCTCGGGGACAAGAGAGCGGTGGCGATTCGGCGCGAGTGGCTTCAGAGAATGACCGGAGGATTCTATTATGTTGGGGCAGATGGGTTTTGCTCTGCTGGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAACGGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

188

Amino Acids

21.4

Weight (kDa)

5.18

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 66 - 164 1.5e-13 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 488, 510
Acc36I ACCTGC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 544
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 543
AcsI RAATTY 2 cut(s) 332, 419
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 285, 438
AjnI CCWGG 2 cut(s) 48, 314
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 1 cut(s) 543
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 2 cut(s) 332, 419
Asp700I GAANNNNTTC 2 cut(s) 300, 333
AspLEI GCGC 2 cut(s) 68, 129
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 98
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 26
BccI CCATC 1 cut(s) 170
BceAI ACGGC 4 cut(s) 38, 53, 79, 416
BciT130I CCWGG 2 cut(s) 50, 316
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 4 cut(s) 59, 393, 402, 548
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 50, 316
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 50, 316
BmsI GCATC 3 cut(s) 223, 298, 379
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 48, 314, 315
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 438
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 50, 316
BseDI CCNNGG 3 cut(s) 48, 314, 315
BseGI GGATG 2 cut(s) 298, 415
BseLI CCNNNNNNNGG 2 cut(s) 285, 438
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 18, 453
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 44
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 285, 438
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 535
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 19, 454
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 3 cut(s) 48, 314, 315
BssMI GATC 1 cut(s) 535
BssNAI GTATAC 1 cut(s) 545
BssNI GRCGYC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 50, 316
Bst4CI ACNGT 3 cut(s) 265, 285, 564
BstACI GRCGYC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 27, 462
BstF5I GGATG 2 cut(s) 298, 415
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 129
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 2 cut(s) 133, 398
BstNI CCWGG 2 cut(s) 50, 316
BstSCI CCNGG 2 cut(s) 48, 314
BstUI CGCG 1 cut(s) 129
BstZ17I GTATAC 1 cut(s) 545
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 2 cut(s) 298, 415
BveI ACCTGC 1 cut(s) 429
CfoI GCGC 2 cut(s) 68, 129
CseI GACGC 1 cut(s) 14
CviAII CATG 1 cut(s) 368
CviJI RGCY 6 cut(s) 53, 97, 136, 365, 401, 431
CviKI_1 RGCY 6 cut(s) 53, 97, 136, 365, 401, 431
DdeI CTNAG 2 cut(s) 27, 462
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
DraI TTTAAA 1 cut(s) 253
Eco32I GATATC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 48, 314
EcoRV GATATC 1 cut(s) 471
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 1 cut(s) 371
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 544
FokI GGATG 2 cut(s) 305, 422
FspBI CTAG 4 cut(s) 59, 393, 402, 548
GlaI GCGC 2 cut(s) 67, 128
GsaI CCCAGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 68, 129
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 2 cut(s) 66, 127
HinP1I GCGC 2 cut(s) 66, 127
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 89, 121, 156, 275, 371
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 325, 545
Hpy188I TCNGA 3 cut(s) 28, 141, 280
Hpy188III TCNNGA 4 cut(s) 59, 86, 305, 338
Hpy8I GTNNAC 2 cut(s) 325, 545
HpyCH4III ACNGT 3 cut(s) 265, 285, 564
HpyCH4V TGCA 2 cut(s) 228, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 398
HpyF3I CTNAG 2 cut(s) 27, 462
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 2 cut(s) 66, 127
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 535
LpnPI CCDG 9 cut(s) 35, 62, 163, 177, 301, 318, 328, 424, 527
LweI GCATC 3 cut(s) 223, 298, 379
MaeI CTAG 4 cut(s) 59, 393, 402, 548
MaeIII GTNAC 1 cut(s) 527
MalI GATC 1 cut(s) 537
MbiI CCGCTC 1 cut(s) 113
MboI GATC 1 cut(s) 535
MboII GAAGA 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 2 cut(s) 332, 419
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 2 cut(s) 284, 365
MnlI CCTC 6 cut(s) 22, 25, 31, 146, 457, 486
MroXI GAANNNNTTC 2 cut(s) 300, 333
MseI TTAA 2 cut(s) 252, 444
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 50, 316
MvaI CCWGG 2 cut(s) 50, 316
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 133, 398
NarI GGCGCC 1 cut(s) 66
NdeII GATC 1 cut(s) 535
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 67
PasI CCCWGGG 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PdmI GAANNNNTTC 2 cut(s) 300, 333
PfeI GAWTC 3 cut(s) 89, 121, 156
PflFI GACNNNGTC 1 cut(s) 274
PleI GAGTC 2 cut(s) 283, 365
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 2 cut(s) 283, 365
PsiI TTATAA 2 cut(s) 488, 510
Psp6I CCWGG 2 cut(s) 48, 314
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 48, 314
PspN4I GGNNCC 1 cut(s) 67
PsyI GACNNNGTC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 252, 444
Sau3AI GATC 1 cut(s) 535
SchI GAGTC 2 cut(s) 284, 365
ScrFI CCNGG 2 cut(s) 50, 316
SduI GDGCHC 1 cut(s) 26
SetI ASST 3 cut(s) 99, 209, 443
SfaNI GCATC 3 cut(s) 223, 298, 379
SfoI GGCGCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 2 cut(s) 332, 419
SsiI CCGC 1 cut(s) 113
SspDI GGCGCC 1 cut(s) 65
SspI AATATT 1 cut(s) 352
SspMI CTAG 4 cut(s) 59, 393, 402, 548
StyD4I CCNGG 2 cut(s) 48, 314
TaaI ACNGT 3 cut(s) 265, 285, 564
TaqI TCGA 4 cut(s) 87, 92, 473, 479
TasI AATT 2 cut(s) 332, 419
TfiI GAWTC 3 cut(s) 89, 121, 156
Tru1I TTAA 2 cut(s) 252, 444
Tru9I TTAA 2 cut(s) 252, 444
TspDTI ATGAA 2 cut(s) 309, 432
TspGWI ACGGA 2 cut(s) 63, 287
Tth111I GACNNNGTC 1 cut(s) 274
XapI RAATTY 2 cut(s) 332, 419
XbaI TCTAGA 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 544
XmnI GAANNNNTTC 2 cut(s) 300, 333
XspI CTAG 4 cut(s) 59, 393, 402, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.