RchiOBHm_Chr3g0475161

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001730
Physical Location & Seq
Reverse (-)
20953975 .. 20955176
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44067

Sequence Viewer

Length: 501 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATACCATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCAAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAACGGTATGAATCTCTTTGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGAACTTAGCTTGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

166

Amino Acids

19.09

Weight (kDa)

7.52

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 137 1.2e-21 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 68, 407, 429
Acc36I ACCTGC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 463
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 4 cut(s) 76, 83, 251, 338
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 462
ApoI RAATTY 4 cut(s) 76, 83, 251, 338
Asp700I GAANNNNTTC 2 cut(s) 219, 252
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 3 cut(s) 312, 321, 467
BfuAI ACCTGC 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 4 cut(s) 54, 118, 217, 298
BsaJI CCNNGG 2 cut(s) 233, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 2 cut(s) 130, 196
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 3 cut(s) 45, 217, 334
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 2 cut(s) 130, 196
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 462
BsrDI GCAATG 2 cut(s) 130, 196
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 1 cut(s) 454
BssNAI GTATAC 1 cut(s) 464
Bst1107I GTATAC 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 160, 180
BstC8I GCNNGC 2 cut(s) 11, 493
BstDEI CTNAG 2 cut(s) 381, 487
BstF5I GGATG 3 cut(s) 45, 217, 334
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 233
BstZ17I GTATAC 1 cut(s) 464
BtsCI GGATG 3 cut(s) 45, 217, 334
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 11, 493
CviAII CATG 3 cut(s) 39, 287, 496
CviJI RGCY 4 cut(s) 284, 320, 350, 491
CviKI_1 RGCY 4 cut(s) 284, 320, 350, 491
DdeI CTNAG 2 cut(s) 381, 487
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraI TTTAAA 1 cut(s) 148
Eco32I GATATC 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 390
FaeI CATG 3 cut(s) 42, 290, 499
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 3 cut(s) 38, 286, 495
FblI GTMKAC 1 cut(s) 463
FokI GGATG 3 cut(s) 32, 224, 341
FspBI CTAG 3 cut(s) 312, 321, 467
Hin1II CATG 3 cut(s) 42, 290, 499
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 170, 185, 290
Hpy166II GTNNAC 2 cut(s) 244, 464
Hpy188I TCNGA 2 cut(s) 82, 175
Hpy188III TCNNGA 2 cut(s) 224, 257
Hpy8I GTNNAC 2 cut(s) 244, 464
HpyCH4III ACNGT 2 cut(s) 160, 180
HpyCH4V TGCA 5 cut(s) 57, 123, 201, 230, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 381, 487
Hsp92II CATG 3 cut(s) 42, 290, 499
Kzo9I GATC 1 cut(s) 454
LpnPI CCDG 6 cut(s) 73, 220, 237, 247, 343, 446
LweI GCATC 4 cut(s) 54, 118, 217, 298
MaeI CTAG 3 cut(s) 312, 321, 467
MaeIII GTNAC 1 cut(s) 446
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 1 cut(s) 260
MluCI AATT 5 cut(s) 29, 76, 83, 251, 338
MlyI GAGTC 2 cut(s) 179, 284
MnlI CCTC 2 cut(s) 376, 405
MroXI GAANNNNTTC 2 cut(s) 219, 252
MseI TTAA 2 cut(s) 147, 363
MslI CAYNNNNRTG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 1 cut(s) 454
NlaIII CATG 3 cut(s) 42, 290, 499
NspI RCATGY 1 cut(s) 499
PasI CCCWGGG 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 219, 252
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 169
PleI GAGTC 2 cut(s) 178, 284
PpsI GAGTC 2 cut(s) 178, 284
PsiI TTATAA 3 cut(s) 68, 407, 429
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 2 cut(s) 147, 363
Sau3AI GATC 1 cut(s) 454
SchI GAGTC 2 cut(s) 179, 284
ScrFI CCNGG 1 cut(s) 235
SetI ASST 4 cut(s) 92, 104, 362, 493
SfaNI GCATC 4 cut(s) 54, 118, 217, 298
SmiMI CAYNNNNRTG 1 cut(s) 407
Sse9I AATT 5 cut(s) 29, 76, 83, 251, 338
SspI AATATT 1 cut(s) 271
SspMI CTAG 3 cut(s) 312, 321, 467
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 160, 180
TaqI TCGA 2 cut(s) 392, 398
TasI AATT 5 cut(s) 29, 76, 83, 251, 338
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 147, 363
Tru9I TTAA 2 cut(s) 147, 363
TspDTI ATGAA 3 cut(s) 198, 228, 351
TspGWI ACGGA 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 4 cut(s) 76, 83, 251, 338
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 219, 252
XspI CTAG 3 cut(s) 312, 321, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.