pycom17g12190

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001730
Physical Location & Seq
Forward (+)
9926383 .. 9929618
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g12190.4

Sequence Viewer

Length: 1206 bp
ATGGAAATAAAACCAAATAGGAAAGGGCACGCGGAATTACCGCGTATTCTGAGGTTGTACACTTTAGCAGGGGACACAACAAATATAGAGAGAGAGAACGAAAGCGGCGAGAGAGAAGCAGCAAAGGTTGTGGTGGTGGGTGGCGGAGGTGGCATATTGGTAAACAAGAAGGCCAAACTCCAGTCTCTTGTTGGATTCGGATGGCAGAGGTCGAGCCCAAAGATACTAACGGCACTAGCAACGGCAGTGCCAATTCGAATTCGAACCCCGCCGATCGAGCCGGACCGCCTTGTTCGTGTCTACGCCGATGGGATCTACGATCTCTTCCACTTCGGCCACGCTCGCTCGCTCGAGCAGGCCAAGAAATCGTTCCCTAACACCTATCTGCTCGTCGGTTGTTGTAATGATGAAACAACTCACAAGTTTAAAGGGAAAACTGTTATGACAGAGTCTGAACGTTATGAATCTCTTCGCCATTGCAAGTGGGTAGATGAAGTCATTCCTGATGCACCTTGGGTGATCAATCAAGAATTTCTTGACAAGCATGAGATTGACTTTGTAGCCCATGACTCTCTACCTTATGCTGATACAAGTGGAGCTGGGCAAGACGTGTACGAATTTGTCAAAGCCGTGGGGAGGTTTAAGGAAACAAAGAGAACTGATGGGATTTCAACTTCGGACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGATATACAAGAAAAGAGCTTGGTGTTAGTTTTGTGAAGGAAAAGCGATTAAGGGTGAACATGAGATTGAAGAAGTTTCAAGAGAAAGTGAAGGAACATCAAGAGAAAGTAGGAGAGAAGATTCAAACTGTTGCTATGCATCGTAATGAATGGGTTGAAAATGCTGATCGCTGGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACAGCCATCAGAGATCGAATTCAAGAGAGCTTACGAGGGCAGCAGTCGGGAGAAAAATATCTGCTGGAAAATGGTAAGGTGGACAGCGATGATGGACAAGAATATTATGACGAGGATGATGACGAAGAGTACTACGACGATGAAGAATCATATGACGATGAAGAATATTATCAAGAGGTATATGGAAAAGAAGGGAACAGTGAGAACGAAAAGGAGGAGAAAGAACAAAATGTGAAAGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

402

Amino Acids

46.38

Weight (kDa)

5.3

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 686, 708
AccB7I CCANNNNNTGG 1 cut(s) 955
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 32, 43
AciI CCGC 6 cut(s) 32, 41, 105, 144, 269, 286
AclI AACGTT 1 cut(s) 457
AclWI GGATC 2 cut(s) 320, 741
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 4 cut(s) 258, 530, 617, 978
AfaI GTAC 3 cut(s) 59, 614, 1091
AfiI CCNNNNNNNGG 2 cut(s) 636, 955
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 7 cut(s) 672, 808, 818, 863, 896, 938, 983
AjiI CACGTC 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 599, 757, 990
AluI AGCT 3 cut(s) 599, 757, 990
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 2 cut(s) 320, 741
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 3 cut(s) 171, 334, 357
ApeKI GCWGC 2 cut(s) 119, 1000
ApoI RAATTY 4 cut(s) 258, 530, 617, 978
Asp700I GAANNNNTTC 3 cut(s) 368, 468, 498
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 529, 805
AsuII TTCGAA 2 cut(s) 256, 262
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 30, 962
BanII GRGCYC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 131, 1012
BccI CCATC 5 cut(s) 195, 302, 656, 974, 1046
BceAI ACGGC 3 cut(s) 246, 258, 614
BclI TGATCA 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 236
BisI GCNGC 3 cut(s) 106, 120, 1001
BlsI GCNGC 3 cut(s) 107, 121, 1002
BmcAI AGTACT 1 cut(s) 1091
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 496, 886
BpmI CTGGAG 1 cut(s) 164
Bpu14I TTCGAA 2 cut(s) 256, 262
BpuEI CTTGAG 1 cut(s) 947
BsaJI CCNNGG 2 cut(s) 512, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 636, 955
Bse1I ACTGG 2 cut(s) 181, 712
Bse3DI GCAATG 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 512, 630
BseGI GGATG 2 cut(s) 206, 1081
BseLI CCNNNNNNNGG 2 cut(s) 636, 955
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 181, 712
BseRI GAGGAG 1 cut(s) 1190
BseSI GKGCMC 2 cut(s) 30, 962
BseXI GCAGC 2 cut(s) 131, 1012
BseYI CCCAGC 2 cut(s) 599, 909
Bsh1236I CGCG 2 cut(s) 32, 43
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 173, 336, 359
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 636, 955
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 173, 336, 359
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 2 cut(s) 256, 262
Bsp1286I GDGCHC 3 cut(s) 30, 218, 962
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
BspACI CCGC 6 cut(s) 32, 41, 105, 144, 269, 286
BspANI GGCC 3 cut(s) 173, 336, 359
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 2 cut(s) 32, 43
BspPI GGATC 2 cut(s) 320, 741
BspT104I TTCGAA 2 cut(s) 256, 262
BsrDI GCAATG 1 cut(s) 475
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 2 cut(s) 181, 712
BssECI CCNNGG 2 cut(s) 512, 630
BssMI GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
BssT1I CCWWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 439, 868, 1160
Bst6I CTCTTC 3 cut(s) 329, 474, 1080
BstAUI TGTACA 1 cut(s) 57
BstBI TTCGAA 2 cut(s) 256, 262
BstC8I GCNNGC 4 cut(s) 30, 343, 347, 357
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 206, 1081
BstFNI CGCG 2 cut(s) 32, 43
BstKTI GATC 7 cut(s) 276, 315, 322, 522, 736, 907, 976
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 150, 277, 342
BstSLI GKGCMC 2 cut(s) 30, 962
BstUI CGCG 2 cut(s) 32, 43
BstV1I GCAGC 2 cut(s) 131, 1012
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 3 cut(s) 173, 336, 359
BtgI CCRYGG 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 1062
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 2 cut(s) 206, 1081
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 1165
Cac8I GCNNGC 4 cut(s) 30, 343, 347, 357
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 283
CpoI CGGWCCG 1 cut(s) 283
Csp6I GTAC 3 cut(s) 58, 613, 1090
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CspI CGGWCCG 1 cut(s) 283
CviAII CATG 3 cut(s) 545, 566, 799
CviQI GTAC 3 cut(s) 58, 613, 1090
DdeI CTNAG 1 cut(s) 50
DpnI GATC 7 cut(s) 275, 314, 321, 521, 735, 906, 975
DpnII GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
DraI TTTAAA 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 3 cut(s) 329, 474, 1080
EarI CTCTTC 3 cut(s) 329, 474, 1080
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 350
EcoRI GAATTC 2 cut(s) 258, 978
EcoT14I CCWWGG 1 cut(s) 512
EcoT22I ATGCAT 1 cut(s) 879
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 3 cut(s) 548, 569, 802
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 544, 565, 798
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 1111
FbaI TGATCA 1 cut(s) 519
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 106, 120, 1001
FokI GGATG 2 cut(s) 213, 1088
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 3 cut(s) 106, 120, 1001
FspBI CTAG 1 cut(s) 236
GluI GCNGC 3 cut(s) 106, 120, 1001
GsaI CCCAGC 2 cut(s) 603, 913
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 3 cut(s) 173, 336, 359
HapII CCGG 1 cut(s) 281
Hin1II CATG 3 cut(s) 548, 569, 802
HinfI GANTC 6 cut(s) 195, 449, 464, 569, 859, 1106
HpaII CCGG 1 cut(s) 281
HphI GGTGA 2 cut(s) 529, 805
Hpy166II GTNNAC 6 cut(s) 60, 163, 301, 613, 796, 1042
Hpy188I TCNGA 5 cut(s) 51, 200, 454, 679, 971
Hpy188III TCNNGA 9 cut(s) 503, 527, 536, 818, 839, 926, 983, 1008, 1133
Hpy8I GTNNAC 6 cut(s) 60, 163, 301, 613, 796, 1042
Hpy99I CGWCG 2 cut(s) 395, 1100
HpyAV CCTTC 5 cut(s) 163, 769, 823, 935, 1145
HpyCH4III ACNGT 3 cut(s) 439, 868, 1160
HpyCH4IV ACGT 2 cut(s) 457, 609
HpyCH4V TGCA 3 cut(s) 480, 509, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 277, 342
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 2 cut(s) 457, 609
Hsp92II CATG 3 cut(s) 548, 569, 802
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 2 cut(s) 131, 1012
LweI GCATC 2 cut(s) 496, 886
MaeI CTAG 1 cut(s) 236
MaeII ACGT 2 cut(s) 457, 609
MaeIII GTNAC 1 cut(s) 725
MalI GATC 7 cut(s) 275, 314, 321, 521, 735, 906, 975
MboI GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
MboII GAAGA 8 cut(s) 316, 461, 820, 868, 950, 1097, 1115, 1133
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 3 cut(s) 30, 218, 962
MluCI AATT 6 cut(s) 35, 252, 258, 530, 617, 978
MlyI GAGTC 2 cut(s) 458, 563
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 9 cut(s) 45, 140, 201, 630, 684, 989, 1066, 1129, 1168
Mph1103I ATGCAT 1 cut(s) 879
MroXI GAANNNNTTC 3 cut(s) 368, 468, 498
MseI TTAA 3 cut(s) 426, 642, 788
MslI CAYNNNNRTG 2 cut(s) 686, 882
MspI CCGG 1 cut(s) 281
MvnI CGCG 2 cut(s) 32, 43
MwoI GCNNNNNNNGC 3 cut(s) 150, 277, 342
NdeI CATATG 1 cut(s) 1111
NdeII GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
NlaIII CATG 3 cut(s) 548, 569, 802
NsiI ATGCAT 1 cut(s) 879
NspV TTCGAA 2 cut(s) 256, 262
PaeR7I CTCGAG 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 3 cut(s) 368, 468, 498
PfeI GAWTC 4 cut(s) 195, 464, 859, 1106
PflFI GACNNNGTC 1 cut(s) 448
PflMI CCANNNNNTGG 1 cut(s) 955
PkrI GCNGC 3 cut(s) 107, 121, 1002
Ple19I CGATCG 1 cut(s) 276
PleI GAGTC 2 cut(s) 457, 563
PpsI GAGTC 2 cut(s) 457, 563
PsiI TTATAA 2 cut(s) 686, 708
Psp1406I AACGTT 1 cut(s) 457
PspFI CCCAGC 2 cut(s) 599, 909
PspPI GGNCC 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 448
PvuI CGATCG 1 cut(s) 276
RsaI GTAC 3 cut(s) 59, 614, 1091
RsaNI GTAC 3 cut(s) 58, 613, 1090
RseI CAYNNNNRTG 2 cut(s) 686, 882
Rsr2I CGGWCCG 1 cut(s) 283
RsrII CGGWCCG 1 cut(s) 283
SaqAI TTAA 3 cut(s) 426, 642, 788
SatI GCNGC 3 cut(s) 106, 120, 1001
Sau3AI GATC 7 cut(s) 273, 312, 319, 519, 733, 904, 973
Sau96I GGNCC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 2 cut(s) 458, 563
SduI GDGCHC 3 cut(s) 30, 218, 962
SfaNI GCATC 2 cut(s) 496, 886
Sfr274I CTCGAG 1 cut(s) 350
SfuI TTCGAA 2 cut(s) 256, 262
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 686, 882
SmlI CTYRAG 2 cut(s) 350, 926
SmoI CTYRAG 2 cut(s) 350, 926
Sse9I AATT 6 cut(s) 35, 252, 258, 530, 617, 978
SsiI CCGC 6 cut(s) 32, 41, 105, 144, 269, 286
SspI AATATT 2 cut(s) 1064, 1127
SspMI CTAG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 3 cut(s) 439, 868, 1160
TaiI ACGT 2 cut(s) 460, 612
TaqI TCGA 6 cut(s) 212, 256, 262, 276, 351, 976
TasI AATT 6 cut(s) 35, 252, 258, 530, 617, 978
TatI WGTACW 2 cut(s) 57, 1089
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 4 cut(s) 195, 464, 859, 1106
Tru1I TTAA 3 cut(s) 426, 642, 788
Tru9I TTAA 3 cut(s) 426, 642, 788
TscAI CASTG 2 cut(s) 252, 1165
TseI GCWGC 2 cut(s) 119, 1000
TspDTI ATGAA 6 cut(s) 423, 477, 507, 900, 1116, 1134
TspRI CASTG 2 cut(s) 252, 1165
Tth111I GACNNNGTC 1 cut(s) 448
Van91I CCANNNNNTGG 1 cut(s) 955
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 4 cut(s) 258, 530, 617, 978
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 3 cut(s) 368, 468, 498
XspI CTAG 1 cut(s) 236
ZrmI AGTACT 1 cut(s) 1091
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.