Rh5BG152200

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001730
Physical Location & Seq
Forward (+)
15560882 .. 15564695
3814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG152200.1

Sequence Viewer

Length: 804 bp
ATGTTTTTTGGGGTCATGAATTCAATGGAGTTTGATTCAGTTTTGGAAATATTTGCTTTGTGGTTGAACTGTAGGTTCCCAAATACGTACCTGCTTGTTGGCTGCTGCAATGACGAAGTTACTCACAATTACAAGGGCAAAACGGTTATGACCGACCAGGAGCGCTATGAATCTCTCCGCCATTGCAAATGGGTGGATGAAGTTATCCCTGATGCGCCATGGGTTCTCACGCAAGAGTTTCTTGACAAACATCAGATCGACTATGTGGCCCATGATTCTCTTCCCTACGCTGATGCAAGTGGGGCTGGAAAGGATGTCTATGAATTTGTCAAGTCTGTTGGGAAGTTTAAGGAAACAAAGCGAACTGATGGTATCTCTACATCTGATATCATAATGAGGATTGTTAAAGATTACAACCAGTATGTGATGCGTAATTTGGACCGTGGGTACTCAAGAAAGGATCTAGGTGTTAGCTATGTGAGGGAAAAGCGGCTGAGAGTGAATATGGGACTGAAAAAACTACGTGAGAGGGTGAAGGAGCACCAAGAAAAAGTTGGAGAGAAGATACAAATTGTAGCCAAAATGCATCGTAATGAATGGGTGGAGAATGCTGACCGATTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTTCCATAAAATGGGAACAGTCATAAGGGACCGAATTCAAGAGGGAATAAGGAAGCAACAGTTAAAAAGGCTTTTATATGATGAAGACGATGATGATGAGCTATATGGTGATGACTTTGAAGAAGAAAACTATGATGAAGACGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

267

Amino Acids

31.62

Weight (kDa)

5.12

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 26 - 132 6e-22 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 664
AciI CCGC 2 cut(s) 178, 490
AclWI GGATC 1 cut(s) 468
AcsI RAATTY 3 cut(s) 19, 323, 687
AfaI GTAC 2 cut(s) 89, 449
AfeI AGCGCT 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 664
AgsI TTSAA 5 cut(s) 24, 67, 647, 692, 773
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 2 cut(s) 474, 754
AluI AGCT 2 cut(s) 474, 754
Alw21I GWGCWC 1 cut(s) 543
AlwI GGATC 1 cut(s) 468
Aor51HI AGCGCT 1 cut(s) 164
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 102, 105
ApoI RAATTY 3 cut(s) 19, 323, 687
AspLEI GCGC 2 cut(s) 165, 217
AspS9I GGNCC 3 cut(s) 268, 439, 682
AsuHPI GGTGA 2 cut(s) 544, 773
AvaII GGWCC 2 cut(s) 439, 682
BbsI GAAGAC 2 cut(s) 744, 798
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 89, 92
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 99
BisI GCNGC 3 cut(s) 103, 106, 491
BlsI GCNGC 3 cut(s) 104, 107, 492
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 2 cut(s) 439, 682
BmgT120I GGNCC 3 cut(s) 268, 439, 682
BmiI GGNNCC 2 cut(s) 77, 683
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 4 cut(s) 202, 283, 417, 595
BpiI GAAGAC 2 cut(s) 744, 798
BpuEI CTTGAG 2 cut(s) 436, 656
BsaAI YACGTR 2 cut(s) 87, 524
BsaJI CCNNGG 2 cut(s) 218, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 2 cut(s) 115, 181
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 218, 442
BseGI GGATG 2 cut(s) 202, 319
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 2 cut(s) 115, 181
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 418
BseXI GCAGC 2 cut(s) 89, 92
BshFI GGCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 543
BslFI GGGAC 2 cut(s) 522, 695
BslI CCNNNNNNNGG 1 cut(s) 664
BsmFI GGGAC 2 cut(s) 522, 695
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 2 cut(s) 255, 460
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 2 cut(s) 178, 490
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 486
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 77, 683
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 115, 181
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 2 cut(s) 218, 442
BssMI GATC 2 cut(s) 255, 460
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 5 cut(s) 71, 145, 443, 673, 714
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 87, 524
BstDEI CTNAG 1 cut(s) 494
BstDSI CCRYGG 2 cut(s) 218, 442
BstF5I GGATG 2 cut(s) 202, 319
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 2 cut(s) 165, 217
BstKTI GATC 2 cut(s) 258, 463
BstMBI GATC 2 cut(s) 255, 460
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 70
BstSNI TACGTA 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 89, 92
BstV2I GAAGAC 2 cut(s) 744, 798
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 2 cut(s) 218, 442
BtsCI GGATG 2 cut(s) 202, 319
BveI ACCTGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 15
CfoI GCGC 2 cut(s) 165, 217
Cfr13I GGNCC 3 cut(s) 268, 439, 682
Csp6I GTAC 2 cut(s) 88, 448
CviAII CATG 3 cut(s) 16, 219, 272
CviJI RGCY 8 cut(s) 102, 269, 305, 474, 493, 578, 724, 754
CviKI_1 RGCY 8 cut(s) 102, 269, 305, 474, 493, 578, 724, 754
CviQI GTAC 2 cut(s) 88, 448
DdeI CTNAG 1 cut(s) 494
DpnI GATC 2 cut(s) 257, 462
DpnII GATC 2 cut(s) 255, 460
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 167
Eco105I TACGTA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 218
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 439, 682
Eco47III AGCGCT 1 cut(s) 164
EcoRI GAATTC 2 cut(s) 19, 687
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 19, 222, 275
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 2 cut(s) 522, 695
FatI CATG 3 cut(s) 15, 218, 271
Fnu4HI GCNGC 3 cut(s) 103, 106, 491
FokI GGATG 2 cut(s) 209, 326
Fsp4HI GCNGC 3 cut(s) 103, 106, 491
FspBI CTAG 1 cut(s) 464
GlaI GCGC 2 cut(s) 164, 216
GluI GCNGC 3 cut(s) 103, 106, 491
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 1 cut(s) 269
HhaI GCGC 2 cut(s) 165, 217
Hin1II CATG 3 cut(s) 19, 222, 275
Hin6I GCGC 2 cut(s) 163, 215
HinP1I GCGC 2 cut(s) 163, 215
HinfI GANTC 3 cut(s) 35, 170, 275
HphI GGTGA 2 cut(s) 544, 773
Hpy188I TCNGA 2 cut(s) 255, 385
Hpy188III TCNNGA 5 cut(s) 16, 242, 453, 635, 692
HpyAV CCTTC 2 cut(s) 529, 644
HpyCH4III ACNGT 5 cut(s) 71, 145, 443, 673, 714
HpyCH4IV ACGT 2 cut(s) 86, 523
HpyCH4V TGCA 4 cut(s) 108, 186, 296, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 494
HpySE526I ACGT 2 cut(s) 86, 523
Hsp92II CATG 3 cut(s) 19, 222, 275
HspAI GCGC 2 cut(s) 163, 215
Kzo9I GATC 2 cut(s) 255, 460
LmnI GCTCC 2 cut(s) 160, 538
LpnPI CCDG 7 cut(s) 104, 143, 170, 222, 291, 431, 612
Lsp1109I GCAGC 2 cut(s) 89, 92
LweI GCATC 4 cut(s) 202, 283, 417, 595
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 86, 523
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 257, 462
MboI GATC 2 cut(s) 255, 460
MboII GAAGA 7 cut(s) 272, 574, 659, 749, 785, 788, 803
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 7 cut(s) 19, 127, 323, 433, 570, 687, 799
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 4 cut(s) 390, 474, 522, 688
Mph1103I ATGCAT 1 cut(s) 588
MseI TTAA 4 cut(s) 348, 405, 716, 802
MslI CAYNNNNRTG 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 302
NcoI CCATGG 1 cut(s) 218
NdeII GATC 2 cut(s) 255, 460
NlaIII CATG 3 cut(s) 19, 222, 275
NlaIV GGNNCC 2 cut(s) 77, 683
NsiI ATGCAT 1 cut(s) 588
PagI TCATGA 1 cut(s) 15
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 3 cut(s) 35, 170, 275
PflMI CCANNNNNTGG 1 cut(s) 664
PkrI GCNGC 3 cut(s) 104, 107, 492
Ppu21I YACGTR 2 cut(s) 87, 524
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 77, 683
PspPI GGNCC 3 cut(s) 268, 439, 682
PsuI RGATCY 1 cut(s) 460
RsaI GTAC 2 cut(s) 89, 449
RsaNI GTAC 2 cut(s) 88, 448
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 4 cut(s) 348, 405, 716, 802
SatI GCNGC 3 cut(s) 103, 106, 491
Sau3AI GATC 2 cut(s) 255, 460
Sau96I GGNCC 3 cut(s) 268, 439, 682
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 543
SetI ASST 8 cut(s) 77, 89, 93, 469, 476, 526, 655, 756
SfaNI GCATC 4 cut(s) 202, 283, 417, 595
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 2 cut(s) 439, 682
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 2 cut(s) 451, 635
SmoI CTYRAG 2 cut(s) 451, 635
SnaBI TACGTA 1 cut(s) 87
Sse9I AATT 7 cut(s) 19, 127, 323, 433, 570, 687, 799
SsiI CCGC 2 cut(s) 178, 490
SspI AATATT 1 cut(s) 51
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 5 cut(s) 71, 145, 443, 673, 714
TaiI ACGT 2 cut(s) 89, 526
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 3 cut(s) 167, 630, 699
TasI AATT 7 cut(s) 19, 127, 323, 433, 570, 687, 799
TauI GCSGC 1 cut(s) 493
TfiI GAWTC 3 cut(s) 35, 170, 275
Tru1I TTAA 4 cut(s) 348, 405, 716, 802
Tru9I TTAA 4 cut(s) 348, 405, 716, 802
TseI GCWGC 2 cut(s) 102, 105
TspDTI ATGAA 7 cut(s) 32, 183, 213, 336, 609, 750, 804
Van91I CCANNNNNTGG 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 439, 682
XapI RAATTY 3 cut(s) 19, 323, 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.