RchiOBHm_Chr2g0153491

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001730
Physical Location & Seq
Reverse (-)
70792166 .. 70796870
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52256

Sequence Viewer

Length: 1035 bp
ATGGCGGAGGAGGTTGCTGACCCCAAAGATACTTCTCACACCTCCAACACTACTCGTTCTAATTCCAATTCCGATCCAGATGGGAATCGTCTCGTCCGTGTCTACGCCGATGGGATCTACGATCTCTTCCACTTCGGCCATGCTCGCTCTCTTGAGCAAGCCAAGTTATCGTTCCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAAAGATATGAATCTCTTCGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCTTGGGTGGTCAATGAAGAATTTCTTGACAAGCATAATATTGACTATGTAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTGGAGCTGGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAACGAACTGAGGGGATATCGACATCGGACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGGTATACTAGAAAAGAGCTTGGCGTTAGTTTTGTGAAGGAAAAACGATTGAGGGTGAACATGAGGTTGAAAAAGTTACAGGAGAAAGTGAAGGAACATCAAGAAAAAGTAGGAGAAAAGATTCAGACTGTTGCTATGCATCGTAATGAATGGGTTGAAAATGCTGATCGCTGGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACTGCCATTAGAGATCGAATTCAAGAGCGCTTAAGAGGCCAGCAGTCGGCAGGTCTCCTGGAAAATGGTAAGGCGGTTACTGATGATGATGCTGAAGAATATTATGATGATGAAGATGAAGAATATTATGATGAGGAAGAATATTATGACGATGAAGAATATTATGAAGAGGTATACGGGAAAGACCCAAATAATGAGAAAGAGGGAAATGATAAAGGAAAGAGTGAGAAAGAAAAGGATGAGAAAGAACATACTGACAAAGAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

344

Amino Acids

40.11

Weight (kDa)

5.03

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 35 - 164 8.1e-32 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 488, 510
Acc36I ACCTGC 2 cut(s) 429, 803
AccB7I CCANNNNNTGG 1 cut(s) 757
AccI GTMKAC 3 cut(s) 102, 545, 936
AciI CCGC 2 cut(s) 5, 836
AclWI GGATC 3 cut(s) 68, 122, 543
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 3 cut(s) 332, 419, 780
AcuI CTGAAG 1 cut(s) 876
AfeI AGCGCT 1 cut(s) 791
AfiI CCNNNNNNNGG 3 cut(s) 438, 757, 808
AflII CTTAAG 1 cut(s) 793
AgsI TTSAA 4 cut(s) 610, 698, 740, 785
AjnI CCWGG 1 cut(s) 819
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 401, 559
AluI AGCT 2 cut(s) 401, 559
Alw26I GTCTC 3 cut(s) 95, 443, 821
AlwI GGATC 3 cut(s) 68, 122, 543
Aor51HI AGCGCT 1 cut(s) 791
AoxI GGCC 2 cut(s) 136, 799
ApoI RAATTY 3 cut(s) 332, 419, 780
Asp700I GAANNNNTTC 4 cut(s) 270, 300, 333, 660
AspLEI GCGC 1 cut(s) 792
AsuHPI GGTGA 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 764
BccI CCATC 2 cut(s) 74, 104
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 821
BcoDI GTCTC 3 cut(s) 95, 443, 821
BfaI CTAG 2 cut(s) 393, 549
BfoI RGCGCY 1 cut(s) 793
BfrI CTTAAG 1 cut(s) 793
BfuAI ACCTGC 2 cut(s) 429, 803
Bme1390I CCNGG 1 cut(s) 821
BmrFI CCNGG 1 cut(s) 821
BmsI GCATC 5 cut(s) 199, 298, 379, 688, 841
BpuEI CTTGAG 2 cut(s) 173, 749
BsaBI GATNNNNATC 2 cut(s) 84, 265
BsaI GGTCTC 1 cut(s) 821
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 3 cut(s) 438, 757, 808
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 2 cut(s) 211, 277
Bse8I GATNNNNATC 2 cut(s) 84, 265
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 3 cut(s) 298, 415, 1006
BseJI GATNNNNATC 2 cut(s) 84, 265
BseLI CCNNNNNNNGG 3 cut(s) 438, 757, 808
BseMI GCAATG 2 cut(s) 211, 277
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 764
BseYI CCCAGC 1 cut(s) 711
BshFI GGCC 2 cut(s) 138, 801
BslI CCNNNNNNNGG 3 cut(s) 438, 757, 808
BsmAI GTCTC 3 cut(s) 95, 443, 821
BsmBI CGTCTC 1 cut(s) 95
BsnI GGCC 2 cut(s) 138, 801
Bso31I GGTCTC 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 6 cut(s) 73, 114, 121, 535, 706, 775
BspACI CCGC 2 cut(s) 5, 836
BspANI GGCC 2 cut(s) 138, 801
BspCNI CTCAG 1 cut(s) 454
BspMI ACCTGC 2 cut(s) 429, 803
BspPI GGATC 3 cut(s) 68, 122, 543
BspTI CTTAAG 1 cut(s) 793
BspTNI GGTCTC 1 cut(s) 821
BsrDI GCAATG 2 cut(s) 211, 277
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 6 cut(s) 73, 114, 121, 535, 706, 775
BssNAI GTATAC 2 cut(s) 546, 937
BssT1I CCWWGG 1 cut(s) 314
Bst1107I GTATAC 2 cut(s) 546, 937
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 2 cut(s) 241, 670
Bst6I CTCTTC 3 cut(s) 131, 276, 924
BstAFI CTTAAG 1 cut(s) 793
BstC8I GCNNGC 3 cut(s) 145, 159, 803
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 298, 415, 1006
BstH2I RGCGCY 1 cut(s) 793
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 6 cut(s) 76, 117, 124, 538, 709, 778
BstMAI GTCTC 3 cut(s) 95, 443, 821
BstMBI GATC 6 cut(s) 73, 114, 121, 535, 706, 775
BstMWI GCNNNNNNNGC 3 cut(s) 144, 398, 798
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 764
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BstZ17I GTATAC 2 cut(s) 546, 937
BsuRI GGCC 2 cut(s) 138, 801
BtsCI GGATG 3 cut(s) 298, 415, 1006
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 2 cut(s) 429, 803
Cac8I GCNNGC 3 cut(s) 145, 159, 803
CfoI GCGC 1 cut(s) 792
CviAII CATG 3 cut(s) 140, 368, 601
CviJI RGCY 7 cut(s) 138, 161, 365, 401, 431, 559, 801
CviKI_1 RGCY 7 cut(s) 138, 161, 365, 401, 431, 559, 801
DdeI CTNAG 1 cut(s) 462
DpnI GATC 6 cut(s) 75, 116, 123, 537, 708, 777
DpnII GATC 6 cut(s) 73, 114, 121, 535, 706, 775
DraI TTTAAA 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 131, 276, 924
EarI CTCTTC 3 cut(s) 131, 276, 924
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 821
Eco32I GATATC 1 cut(s) 471
Eco47III AGCGCT 1 cut(s) 791
Eco57I CTGAAG 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 819
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 314
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 143, 371, 604
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 3 cut(s) 139, 367, 600
FblI GTMKAC 3 cut(s) 102, 545, 936
FokI GGATG 3 cut(s) 305, 422, 1013
FspBI CTAG 2 cut(s) 393, 549
GlaI GCGC 1 cut(s) 791
GsaI CCCAGC 1 cut(s) 715
HaeII RGCGCY 1 cut(s) 793
HaeIII GGCC 2 cut(s) 138, 801
HhaI GCGC 1 cut(s) 792
Hin1II CATG 3 cut(s) 143, 371, 604
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HinfI GANTC 5 cut(s) 85, 251, 266, 371, 661
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 4 cut(s) 103, 546, 598, 937
Hpy188I TCNGA 4 cut(s) 73, 256, 481, 666
Hpy188III TCNNGA 7 cut(s) 77, 152, 305, 338, 641, 728, 785
Hpy8I GTNNAC 4 cut(s) 103, 546, 598, 937
HpyAV CCTTC 3 cut(s) 571, 625, 737
HpyCH4III ACNGT 2 cut(s) 241, 670
HpyCH4V TGCA 4 cut(s) 204, 282, 311, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 398, 798
HpyF3I CTNAG 1 cut(s) 462
Hsp92II CATG 3 cut(s) 143, 371, 604
HspAI GCGC 1 cut(s) 790
Kzo9I GATC 6 cut(s) 73, 114, 121, 535, 706, 775
LmnI GCTCC 1 cut(s) 398
LweI GCATC 5 cut(s) 199, 298, 379, 688, 841
MaeI CTAG 2 cut(s) 393, 549
MaeIII GTNAC 3 cut(s) 527, 615, 838
MalI GATC 6 cut(s) 75, 116, 123, 537, 708, 777
MboI GATC 6 cut(s) 73, 114, 121, 535, 706, 775
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 5 cut(s) 61, 67, 332, 419, 780
MlyI GAGTC 2 cut(s) 260, 365
MmeI TCCRAC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 681
MroXI GAANNNNTTC 4 cut(s) 270, 300, 333, 660
MseI TTAA 3 cut(s) 228, 444, 794
MslI CAYNNNNRTG 2 cut(s) 488, 684
MspCI CTTAAG 1 cut(s) 793
MspR9I CCNGG 1 cut(s) 821
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 3 cut(s) 144, 398, 798
NdeII GATC 6 cut(s) 73, 114, 121, 535, 706, 775
NlaIII CATG 3 cut(s) 143, 371, 604
NsiI ATGCAT 1 cut(s) 681
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 4 cut(s) 270, 300, 333, 660
PfeI GAWTC 3 cut(s) 85, 266, 661
PflFI GACNNNGTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 819
PleI GAGTC 2 cut(s) 259, 365
PpsI GAGTC 2 cut(s) 259, 365
PsiI TTATAA 2 cut(s) 488, 510
Psp6I CCWGG 1 cut(s) 819
PspFI CCCAGC 1 cut(s) 711
PspGI CCWGG 1 cut(s) 819
PsuI RGATCY 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 488, 684
SaqAI TTAA 3 cut(s) 228, 444, 794
Sau3AI GATC 6 cut(s) 73, 114, 121, 535, 706, 775
SchI GAGTC 2 cut(s) 260, 365
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 5 cut(s) 199, 298, 379, 688, 841
SmiMI CAYNNNNRTG 2 cut(s) 488, 684
SmlI CTYRAG 3 cut(s) 152, 728, 793
SmoI CTYRAG 3 cut(s) 152, 728, 793
Sse9I AATT 5 cut(s) 61, 67, 332, 419, 780
SsiI CCGC 2 cut(s) 5, 836
SspI AATATT 5 cut(s) 352, 863, 887, 905, 923
SspMI CTAG 2 cut(s) 393, 549
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 241, 670
TaqI TCGA 2 cut(s) 473, 778
TasI AATT 5 cut(s) 61, 67, 332, 419, 780
TfiI GAWTC 3 cut(s) 85, 266, 661
Tru1I TTAA 3 cut(s) 228, 444, 794
Tru9I TTAA 3 cut(s) 228, 444, 794
TscAI CASTG 1 cut(s) 769
TspDTI ATGAA 9 cut(s) 279, 309, 342, 432, 702, 888, 894, 930, 942
TspGWI ACGGA 2 cut(s) 86, 263
TspRI CASTG 1 cut(s) 769
Tth111I GACNNNGTC 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 793
XapI RAATTY 3 cut(s) 332, 419, 780
XmiI GTMKAC 3 cut(s) 102, 545, 936
XmnI GAANNNNTTC 4 cut(s) 270, 300, 333, 660
XspI CTAG 2 cut(s) 393, 549
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.