Prupe.3G185600_v2.0.a1

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001730
Physical Location & Seq
Reverse (-)
20017461 .. 20022278
4818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G185600.1

Sequence Viewer

Length: 999 bp
ATGGCAGAGGTTGAGCCCAAAGATACTTGTGACACCAGCAACACCAGTGTCCATTCGAATTCCAACGCCGATCAACCCGACCGCCTTGTTCGCGTCTACGCCGATGGGATCTACGATCTCTTCCACTTCGGCCATGCTCGCTCCCTCGAGCAAGCCAAGAAATCGTTCCCTAACACCTATCTGCTCGTTGGTTGTTGTAATGATGAAACCACTCACAAATTTAAAGGCAAGACTGTTATGACAGAGTCTGAACGTTATGAATCTCTTCGCCATTGCAAGTGGGTAGATGAAGTCATTCCTGATGCACCTTGGGTGATCAATCAAGAATTTCTTGACAAGCATGAGATTGACTATGTGGCCCATGACTCTCTCCCTTATGCTGATGCCAGTGGAGCTGGGAAAGATGTGTATGAATTTGTCAAAGCAGTGGGGAGGTTTAAGGAAACAAAGAGAACTGATGGGATTTCGACATCAGACATTATAATGAGGATTGTAAAAGATTATAATCAGTATGTGTTGCGTAACTTGGATCGTGGATATACAAGAAAAGAGCTTGGTGTTAGTTTTGTGAAGGAAAAGCGGTTAAGGGTGAACATGAGATTGAAGAAATTACAAGAGAAAGTGAAGGAACATCAAGAAAAAGTGGGAGAGAAGATCCAGACTGTTGCTATGCATCGTAATGAGTGGGTAGAAAATGCTGATCGCTGGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACAGCCATCAGAGATCGAATTCAAGAGAGCTTAAGAGGGCAGCAGTCGAGAGAAAAGTATCTGCTGGAAAATGGTAAGGCGGATAGTGATGCTGAAGAATACTACGATGAGGATGATGACGAAGAGTACTATGATGATGAAGAATACTATGACGATGAAGAATATTATGAGGAGGTATATGGAAAAGATGGGAATAATGAGAAAGAAAAGGTTGAGAAAGAAAAGAATGAGAAAGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

333

Amino Acids

38.96

Weight (kDa)

5.02

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 482, 504
AccB7I CCANNNNNTGG 1 cut(s) 751
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 82, 580, 836
AclI AACGTT 1 cut(s) 253
AclWI GGATC 3 cut(s) 116, 537, 649
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 5 cut(s) 58, 218, 326, 413, 774
AcuI CTGAAG 1 cut(s) 870
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 1 cut(s) 751
AflII CTTAAG 1 cut(s) 787
AgsI TTSAA 3 cut(s) 604, 734, 779
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 395, 553, 786
AluI AGCT 3 cut(s) 395, 553, 786
AlwI GGATC 3 cut(s) 116, 537, 649
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 2 cut(s) 130, 357
ApeKI GCWGC 1 cut(s) 796
ApoI RAATTY 5 cut(s) 58, 218, 326, 413, 774
Asp700I GAANNNNTTC 3 cut(s) 164, 264, 294
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 325, 601
AsuII TTCGAA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 808
BccI CCATC 4 cut(s) 98, 452, 770, 938
BclI TGATCA 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 787
BisI GCNGC 1 cut(s) 797
BlsI GCNGC 1 cut(s) 798
BmcAI AGTACT 1 cut(s) 884
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 358
BmsI GCATC 4 cut(s) 292, 373, 682, 835
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 743
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 45, 387
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 874
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 751
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 45, 387
BseRI GAGGAG 1 cut(s) 941
BseSI GKGCMC 1 cut(s) 758
BseXI GCAGC 1 cut(s) 808
BseYI CCCAGC 2 cut(s) 395, 705
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 132, 359
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 751
BsnI GGCC 2 cut(s) 132, 359
BsoBI CYCGRG 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 18, 758
Bsp143I GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
BspACI CCGC 3 cut(s) 82, 580, 836
BspANI GGCC 2 cut(s) 132, 359
BspFNI CGCG 1 cut(s) 93
BspPI GGATC 3 cut(s) 116, 537, 649
BspT104I TTCGAA 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 45, 387
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 235, 664
Bst6I CTCTTC 3 cut(s) 125, 270, 873
BstAFI CTTAAG 1 cut(s) 787
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 139, 153
BstF5I GGATG 1 cut(s) 874
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 8 cut(s) 73, 111, 118, 318, 532, 657, 703, 772
BstMBI GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 90, 138, 392
BstSLI GKGCMC 1 cut(s) 758
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 808
BstX2I RGATCY 2 cut(s) 108, 654
BstYI RGATCY 2 cut(s) 108, 654
BsuRI GGCC 2 cut(s) 132, 359
BtsCI GGATG 1 cut(s) 874
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 3 cut(s) 52, 394, 432
Cac8I GCNNGC 2 cut(s) 139, 153
CaiI CAGNNNCTG 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 883
CviAII CATG 4 cut(s) 134, 341, 362, 595
CviJI RGCY 8 cut(s) 16, 132, 155, 359, 395, 553, 761, 786
CviKI_1 RGCY 8 cut(s) 16, 132, 155, 359, 395, 553, 761, 786
CviQI GTAC 1 cut(s) 883
DpnI GATC 8 cut(s) 72, 110, 117, 317, 531, 656, 702, 771
DpnII GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
DraI TTTAAA 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 3 cut(s) 125, 270, 873
EarI CTCTTC 3 cut(s) 125, 270, 873
EciI GGCGGA 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 146
EcoRI GAATTC 2 cut(s) 58, 774
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 137, 344, 365, 598
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 4 cut(s) 133, 340, 361, 594
FbaI TGATCA 1 cut(s) 315
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 797
FokI GGATG 1 cut(s) 881
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 797
GluI GCNGC 1 cut(s) 797
GsaI CCCAGC 2 cut(s) 399, 709
HaeIII GGCC 2 cut(s) 132, 359
HgaI GACGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 137, 344, 365, 598
HinfI GANTC 3 cut(s) 245, 260, 365
HphI GGTGA 2 cut(s) 325, 601
Hpy166II GTNNAC 2 cut(s) 97, 592
Hpy188I TCNGA 3 cut(s) 250, 475, 767
Hpy188III TCNNGA 8 cut(s) 299, 323, 332, 635, 658, 722, 779, 804
Hpy8I GTNNAC 2 cut(s) 97, 592
HpyAV CCTTC 3 cut(s) 565, 619, 731
HpyCH4III ACNGT 2 cut(s) 235, 664
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 276, 305, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 138, 392
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 4 cut(s) 137, 344, 365, 598
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
LmnI GCTCC 2 cut(s) 146, 392
LpnPI CCDG 9 cut(s) 49, 58, 312, 381, 400, 671, 691, 699, 806
Lsp1109I GCAGC 1 cut(s) 808
LweI GCATC 4 cut(s) 292, 373, 682, 835
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 29, 521
MalI GATC 8 cut(s) 72, 110, 117, 317, 531, 656, 702, 771
MboI GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
MboII GAAGA 9 cut(s) 112, 257, 616, 664, 746, 863, 890, 908, 926
MflI RGATCY 2 cut(s) 108, 654
MhlI GDGCHC 2 cut(s) 18, 758
MluCI AATT 6 cut(s) 58, 218, 326, 413, 608, 774
MlyI GAGTC 2 cut(s) 254, 359
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 7 cut(s) 155, 426, 480, 785, 859, 919, 922
Mph1103I ATGCAT 1 cut(s) 675
MroXI GAANNNNTTC 3 cut(s) 164, 264, 294
MseI TTAA 4 cut(s) 222, 438, 584, 788
MslI CAYNNNNRTG 2 cut(s) 482, 678
MspCI CTTAAG 1 cut(s) 787
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 90, 138, 392
NdeII GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
NlaIII CATG 4 cut(s) 137, 344, 365, 598
NmuCI GTSAC 1 cut(s) 29
NsiI ATGCAT 1 cut(s) 675
NspV TTCGAA 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 146
PdmI GAANNNNTTC 3 cut(s) 164, 264, 294
PfeI GAWTC 1 cut(s) 260
PflFI GACNNNGTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 751
PkrI GCNGC 1 cut(s) 798
PleI GAGTC 2 cut(s) 253, 359
PpsI GAGTC 2 cut(s) 253, 359
PsiI TTATAA 2 cut(s) 482, 504
Psp1406I AACGTT 1 cut(s) 253
PspFI CCCAGC 2 cut(s) 395, 705
PspPI GGNCC 1 cut(s) 358
PspXI VCTCGAGB 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 2 cut(s) 108, 654
PsyI GACNNNGTC 1 cut(s) 244
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
RseI CAYNNNNRTG 2 cut(s) 482, 678
SaqAI TTAA 4 cut(s) 222, 438, 584, 788
SatI GCNGC 1 cut(s) 797
Sau3AI GATC 8 cut(s) 70, 108, 115, 315, 529, 654, 700, 769
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 2 cut(s) 254, 359
SduI GDGCHC 2 cut(s) 18, 758
SfaNI GCATC 4 cut(s) 292, 373, 682, 835
Sfr274I CTCGAG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 482, 678
SmlI CTYRAG 3 cut(s) 146, 722, 787
SmoI CTYRAG 3 cut(s) 146, 722, 787
Sse9I AATT 6 cut(s) 58, 218, 326, 413, 608, 774
SsiI CCGC 3 cut(s) 82, 580, 836
SspI AATATT 1 cut(s) 920
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 235, 664
TaiI ACGT 1 cut(s) 256
TaqI TCGA 5 cut(s) 56, 147, 467, 772, 803
TasI AATT 6 cut(s) 58, 218, 326, 413, 608, 774
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 4 cut(s) 222, 438, 584, 788
Tru9I TTAA 4 cut(s) 222, 438, 584, 788
TscAI CASTG 3 cut(s) 52, 394, 432
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 796
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 6 cut(s) 219, 273, 303, 426, 909, 927
TspRI CASTG 3 cut(s) 52, 394, 432
Tth111I GACNNNGTC 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 751
Vha464I CTTAAG 1 cut(s) 787
XapI RAATTY 5 cut(s) 58, 218, 326, 413, 774
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 3 cut(s) 164, 264, 294
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.