Rroxscaffold_2G00094990

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001730
Physical Location & Seq
Forward (+)
16320639 .. 16325274
4636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094990.1

Sequence Viewer

Length: 1017 bp
ATGGCGGAGGTTGCTGACCCCAAAGATACTTCTCACACCACCAACACTACTCGTTCTAATTCCAATTCTGATCCAGATGAGAATCGTCTCGTCCGTGTCTACGCCGATGGGATCTACGATCTCTTCCACTTCGGCCATGCTCGCTCTCTGGAGCAAGCCAAATTATCGTTCCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACTGAGTCCGAAAGATATGAATCTCTTCGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAATGAAGAATTTCTTGACAAGCATAATATTGACTATGTAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTGGAGCTGGAAAGGATGTATACGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAACGAACTGAGGGGATATCGACATCGGACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGGTATACTAGAAAAGAGCTTGGCGTTAGTTTTGTGAAGGAAAAACGATTGAGGGTGAACATGAGGTTGAAAAAGTTACAGGAGAAAGTGAAGGAACATCAAGAAAAAGTAGGAGAAAAGATTCAGACTGTTGCTATGCATCGTAATGAATGGGTAGAAAATGCTGATCGCTGGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACTGCCATTAGAGATCGAATTCAAGAGCGCTTAAGAGGCCAGCAGTCGGCAGGTCTCCTGGAAAATGGTAAGGCGGTTACTGATGATGACGCTGAAGAATATTATGATGATGAAGATGAAGAATATTATGATGAGGAAGAATATTATGACGATGAAGAATATTATGAAGAGGTATACGGGAAAGACCCAAATAATGAGAAAGAGGGAAATGATAAAGGAAAGAGTGAGAAAGAAAATACCGACAAAGAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

338

Amino Acids

39.41

Weight (kDa)

5.02

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 34 - 163 7.7e-32 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 485, 507
Acc36I ACCTGC 2 cut(s) 426, 800
AccB7I CCANNNNNTGG 1 cut(s) 754
AccI GTMKAC 4 cut(s) 99, 411, 542, 933
AciI CCGC 2 cut(s) 5, 833
AclWI GGATC 3 cut(s) 65, 119, 540
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 329, 416, 777
AcuI CTGAAG 1 cut(s) 873
AfeI AGCGCT 1 cut(s) 788
AfiI CCNNNNNNNGG 3 cut(s) 435, 754, 805
AflII CTTAAG 1 cut(s) 790
AgsI TTSAA 3 cut(s) 607, 737, 782
AjnI CCWGG 2 cut(s) 311, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 398, 556
AluI AGCT 2 cut(s) 398, 556
Alw26I GTCTC 3 cut(s) 92, 440, 818
AlwI GGATC 3 cut(s) 65, 119, 540
Aor51HI AGCGCT 1 cut(s) 788
AoxI GGCC 2 cut(s) 133, 796
ApoI RAATTY 3 cut(s) 329, 416, 777
Asp700I GAANNNNTTC 4 cut(s) 267, 297, 330, 657
AspLEI GCGC 1 cut(s) 789
AsuHPI GGTGA 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 761
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 2 cut(s) 313, 818
BcoDI GTCTC 3 cut(s) 92, 440, 818
BfaI CTAG 2 cut(s) 390, 546
BfoI RGCGCY 1 cut(s) 790
BfrI CTTAAG 1 cut(s) 790
BfuAI ACCTGC 2 cut(s) 426, 800
Bme1390I CCNGG 2 cut(s) 313, 818
BmrFI CCNGG 2 cut(s) 313, 818
BmsI GCATC 4 cut(s) 196, 295, 376, 685
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 746
BsaBI GATNNNNATC 2 cut(s) 81, 262
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 311, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 435, 754, 805
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 2 cut(s) 208, 274
Bse8I GATNNNNATC 2 cut(s) 81, 262
BseBI CCWGG 2 cut(s) 313, 818
BseDI CCNNGG 2 cut(s) 311, 312
BseGI GGATG 2 cut(s) 295, 412
BseJI GATNNNNATC 2 cut(s) 81, 262
BseLI CCNNNNNNNGG 3 cut(s) 435, 754, 805
BseMI GCAATG 2 cut(s) 208, 274
BseMII CTCAG 2 cut(s) 237, 450
BseNI ACTGG 1 cut(s) 511
BseSI GKGCMC 1 cut(s) 761
BseYI CCCAGC 1 cut(s) 708
BshFI GGCC 2 cut(s) 135, 798
BslI CCNNNNNNNGG 3 cut(s) 435, 754, 805
BsmAI GTCTC 3 cut(s) 92, 440, 818
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 135, 798
Bso31I GGTCTC 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 761
Bsp143I GATC 6 cut(s) 70, 111, 118, 532, 703, 772
BspACI CCGC 2 cut(s) 5, 833
BspANI GGCC 2 cut(s) 135, 798
BspCNI CTCAG 2 cut(s) 238, 451
BspMI ACCTGC 2 cut(s) 426, 800
BspPI GGATC 3 cut(s) 65, 119, 540
BspTI CTTAAG 1 cut(s) 790
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 2 cut(s) 208, 274
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 311, 312
BssMI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
BssNAI GTATAC 3 cut(s) 412, 543, 934
Bst1107I GTATAC 3 cut(s) 412, 543, 934
Bst2UI CCWGG 2 cut(s) 313, 818
Bst4CI ACNGT 2 cut(s) 238, 667
Bst6I CTCTTC 3 cut(s) 128, 273, 921
BstAFI CTTAAG 1 cut(s) 790
BstC8I GCNNGC 3 cut(s) 142, 156, 800
BstDEI CTNAG 2 cut(s) 246, 459
BstF5I GGATG 2 cut(s) 295, 412
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 6 cut(s) 73, 114, 121, 535, 706, 775
BstMAI GTCTC 3 cut(s) 92, 440, 818
BstMBI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
BstMWI GCNNNNNNNGC 4 cut(s) 11, 141, 395, 795
BstNI CCWGG 2 cut(s) 313, 818
BstSCI CCNGG 2 cut(s) 311, 816
BstSLI GKGCMC 1 cut(s) 761
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 3 cut(s) 412, 543, 934
BsuRI GGCC 2 cut(s) 135, 798
BtsCI GGATG 2 cut(s) 295, 412
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 2 cut(s) 426, 800
Cac8I GCNNGC 3 cut(s) 142, 156, 800
CfoI GCGC 1 cut(s) 789
CseI GACGC 1 cut(s) 857
CviAII CATG 3 cut(s) 137, 365, 598
CviJI RGCY 7 cut(s) 135, 158, 362, 398, 428, 556, 798
CviKI_1 RGCY 7 cut(s) 135, 158, 362, 398, 428, 556, 798
DdeI CTNAG 2 cut(s) 246, 459
DpnI GATC 6 cut(s) 72, 113, 120, 534, 705, 774
DpnII GATC 6 cut(s) 70, 111, 118, 532, 703, 772
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 3 cut(s) 128, 273, 921
EarI CTCTTC 3 cut(s) 128, 273, 921
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 468
Eco47III AGCGCT 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 873
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 311, 816
EcoRV GATATC 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 678
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 3 cut(s) 140, 368, 601
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 3 cut(s) 136, 364, 597
FblI GTMKAC 4 cut(s) 99, 411, 542, 933
FokI GGATG 2 cut(s) 302, 419
FspBI CTAG 2 cut(s) 390, 546
GlaI GCGC 1 cut(s) 788
GsaI CCCAGC 1 cut(s) 712
GsuI CTGGAG 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 2 cut(s) 135, 798
HgaI GACGC 1 cut(s) 857
HhaI GCGC 1 cut(s) 789
Hin1II CATG 3 cut(s) 140, 368, 601
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HinfI GANTC 5 cut(s) 82, 248, 263, 368, 658
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 5 cut(s) 100, 412, 543, 595, 934
Hpy188I TCNGA 4 cut(s) 70, 253, 478, 663
Hpy188III TCNNGA 7 cut(s) 74, 149, 302, 335, 638, 725, 782
Hpy8I GTNNAC 5 cut(s) 100, 412, 543, 595, 934
HpyAV CCTTC 3 cut(s) 568, 622, 734
HpyCH4III ACNGT 2 cut(s) 238, 667
HpyCH4V TGCA 4 cut(s) 201, 279, 308, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 141, 395, 795
HpyF3I CTNAG 2 cut(s) 246, 459
Hsp92II CATG 3 cut(s) 140, 368, 601
HspAI GCGC 1 cut(s) 787
Kzo9I GATC 6 cut(s) 70, 111, 118, 532, 703, 772
LmnI GCTCC 2 cut(s) 151, 395
LweI GCATC 4 cut(s) 196, 295, 376, 685
MaeI CTAG 2 cut(s) 390, 546
MaeIII GTNAC 3 cut(s) 524, 612, 835
MalI GATC 6 cut(s) 72, 113, 120, 534, 705, 774
MboI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 6 cut(s) 58, 64, 161, 329, 416, 777
MlyI GAGTC 2 cut(s) 257, 362
MnlI CCTC 8 cut(s) 454, 483, 582, 594, 788, 886, 922, 955
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 4 cut(s) 267, 297, 330, 657
MseI TTAA 3 cut(s) 225, 441, 791
MslI CAYNNNNRTG 2 cut(s) 485, 681
MspCI CTTAAG 1 cut(s) 790
MspR9I CCNGG 2 cut(s) 313, 818
MvaI CCWGG 2 cut(s) 313, 818
MwoI GCNNNNNNNGC 4 cut(s) 11, 141, 395, 795
NdeII GATC 6 cut(s) 70, 111, 118, 532, 703, 772
NlaIII CATG 3 cut(s) 140, 368, 601
NsiI ATGCAT 1 cut(s) 678
PasI CCCWGGG 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PdmI GAANNNNTTC 4 cut(s) 267, 297, 330, 657
PfeI GAWTC 3 cut(s) 82, 263, 658
PflFI GACNNNGTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 816
PleI GAGTC 2 cut(s) 256, 362
PpsI GAGTC 2 cut(s) 256, 362
PsiI TTATAA 2 cut(s) 485, 507
Psp6I CCWGG 2 cut(s) 311, 816
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 2 cut(s) 311, 816
PsuI RGATCY 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 485, 681
SaqAI TTAA 3 cut(s) 225, 441, 791
Sau3AI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
SchI GAGTC 2 cut(s) 257, 362
ScrFI CCNGG 2 cut(s) 313, 818
SduI GDGCHC 1 cut(s) 761
SetI ASST 9 cut(s) 12, 182, 400, 440, 558, 605, 745, 814, 933
SfaNI GCATC 4 cut(s) 196, 295, 376, 685
SmiMI CAYNNNNRTG 2 cut(s) 485, 681
SmlI CTYRAG 2 cut(s) 725, 790
SmoI CTYRAG 2 cut(s) 725, 790
Sse9I AATT 6 cut(s) 58, 64, 161, 329, 416, 777
SsiI CCGC 2 cut(s) 5, 833
SspI AATATT 5 cut(s) 349, 860, 884, 902, 920
SspMI CTAG 2 cut(s) 390, 546
StyD4I CCNGG 2 cut(s) 311, 816
TaaI ACNGT 2 cut(s) 238, 667
TaqI TCGA 2 cut(s) 470, 775
TasI AATT 6 cut(s) 58, 64, 161, 329, 416, 777
TfiI GAWTC 3 cut(s) 82, 263, 658
Tru1I TTAA 3 cut(s) 225, 441, 791
Tru9I TTAA 3 cut(s) 225, 441, 791
TscAI CASTG 1 cut(s) 766
TspDTI ATGAA 8 cut(s) 276, 306, 339, 699, 885, 891, 927, 939
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 766
Tth111I GACNNNGTC 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 790
XapI RAATTY 3 cut(s) 329, 416, 777
XmiI GTMKAC 4 cut(s) 99, 411, 542, 933
XmnI GAANNNNTTC 4 cut(s) 267, 297, 330, 657
XspI CTAG 2 cut(s) 390, 546
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.