RchiOBHm_Chr4g0420211

Choline-phosphate cytidylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
45849659 .. 45850886
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38998

Sequence Viewer

Length: 312 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATACCATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCGAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAACGGTATGAATCTCTTTGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCAAGACTCTCTCCCGAAGAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.78

Weight (kDa)

5.26

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 95 2.8e-13 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AcsI RAATTY 3 cut(s) 76, 83, 251
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 233
ApoI RAATTY 3 cut(s) 76, 83, 251
Asp700I GAANNNNTTC 2 cut(s) 219, 252
BciT130I CCWGG 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 3 cut(s) 54, 118, 217
BsaJI CCNNGG 2 cut(s) 233, 234
Bse3DI GCAATG 2 cut(s) 130, 196
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 2 cut(s) 45, 217
BseMI GCAATG 2 cut(s) 130, 196
BsrDI GCAATG 2 cut(s) 130, 196
BssECI CCNNGG 2 cut(s) 233, 234
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 160, 180
BstC8I GCNNGC 1 cut(s) 11
BstF5I GGATG 2 cut(s) 45, 217
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 45, 217
Cac8I GCNNGC 1 cut(s) 11
CviAII CATG 1 cut(s) 39
CviJI RGCY 1 cut(s) 284
CviKI_1 RGCY 1 cut(s) 284
DraI TTTAAA 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 1 cut(s) 42
FaiI YATR 9 cut(s) 16, 22, 40, 68, 164, 183, 267, 279, 281
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 1 cut(s) 38
FokI GGATG 2 cut(s) 32, 224
Hin1II CATG 1 cut(s) 42
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 170, 185, 290
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 82, 175
Hpy188III TCNNGA 3 cut(s) 224, 257, 298
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 160, 180
HpyCH4V TGCA 4 cut(s) 57, 123, 201, 230
Hsp92II CATG 1 cut(s) 42
LpnPI CCDG 4 cut(s) 73, 220, 237, 247
LweI GCATC 3 cut(s) 54, 118, 217
MboII GAAGA 1 cut(s) 260
MluCI AATT 4 cut(s) 29, 76, 83, 251
MlyI GAGTC 2 cut(s) 179, 284
MroXI GAANNNNTTC 2 cut(s) 219, 252
MseI TTAA 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
NlaIII CATG 1 cut(s) 42
PasI CCCWGGG 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 219, 252
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 169
PleI GAGTC 2 cut(s) 178, 284
PpsI GAGTC 2 cut(s) 178, 284
PsiI TTATAA 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 147
SchI GAGTC 2 cut(s) 179, 284
ScrFI CCNGG 1 cut(s) 235
SetI ASST 2 cut(s) 92, 104
SfaNI GCATC 3 cut(s) 54, 118, 217
Sse9I AATT 4 cut(s) 29, 76, 83, 251
SspI AATATT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 160, 180
TaqI TCGA 1 cut(s) 73
TasI AATT 4 cut(s) 29, 76, 83, 251
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 198, 228
TspGWI ACGGA 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 3 cut(s) 76, 83, 251
XmnI GAANNNNTTC 2 cut(s) 219, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.