Rw3G022960

Choline-phosphate cytidylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
28528035 .. 28529004
970 bp
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UTR
Exon/CDS
Intron
Rw3G022960.1

Sequence Viewer

Length: 360 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATACCATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCGAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAATTGTTATGACGGAGTCCGAACGGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCGTGCTTCTTTTCTTATAGGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.8

Weight (kDa)

8.51

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 90 4.2e-06 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 68, 358
Acc36I ACCTGC 1 cut(s) 299
AcsI RAATTY 3 cut(s) 76, 83, 227
AfiI CCNNNNNNNGG 2 cut(s) 180, 308
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 313
ApoI RAATTY 3 cut(s) 76, 83, 227
Asp700I GAANNNNTTC 2 cut(s) 195, 228
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 3 cut(s) 54, 118, 193
BsaJI CCNNGG 2 cut(s) 209, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 308
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 209, 210
BseGI GGATG 2 cut(s) 45, 193
BseLI CCNNNNNNNGG 2 cut(s) 180, 308
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 180, 308
BsmAI GTCTC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 324
BspMI ACCTGC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 209, 210
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 45, 193
BstMAI GTCTC 1 cut(s) 313
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 45, 193
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 11
CviAII CATG 2 cut(s) 39, 263
CviJI RGCY 2 cut(s) 260, 301
CviKI_1 RGCY 2 cut(s) 260, 301
DdeI CTNAG 1 cut(s) 332
DraI TTTAAA 1 cut(s) 148
Eco32I GATATC 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 341
FaeI CATG 2 cut(s) 42, 266
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 2 cut(s) 38, 262
FokI GGATG 2 cut(s) 32, 200
Hin1II CATG 2 cut(s) 42, 266
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 170, 266
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 82, 175
Hpy188III TCNNGA 2 cut(s) 200, 233
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 57, 123, 206
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 2 cut(s) 42, 266
LpnPI CCDG 5 cut(s) 73, 196, 213, 223, 294
LweI GCATC 3 cut(s) 54, 118, 193
MboII GAAGA 1 cut(s) 236
MluCI AATT 5 cut(s) 29, 76, 83, 156, 227
MlyI GAGTC 2 cut(s) 179, 260
MnlI CCTC 1 cut(s) 327
MroXI GAANNNNTTC 2 cut(s) 195, 228
MseI TTAA 2 cut(s) 147, 314
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
NlaIII CATG 2 cut(s) 42, 266
PasI CCCWGGG 1 cut(s) 210
PdmI GAANNNNTTC 2 cut(s) 195, 228
PflFI GACNNNGTC 1 cut(s) 169
PleI GAGTC 2 cut(s) 178, 260
PpsI GAGTC 2 cut(s) 178, 260
PsiI TTATAA 2 cut(s) 68, 358
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PsyI GACNNNGTC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 147, 314
SchI GAGTC 2 cut(s) 179, 260
ScrFI CCNGG 1 cut(s) 211
SetI ASST 4 cut(s) 92, 104, 296, 313
SfaNI GCATC 3 cut(s) 54, 118, 193
Sse9I AATT 5 cut(s) 29, 76, 83, 156, 227
SspI AATATT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 73, 343, 349
TasI AATT 5 cut(s) 29, 76, 83, 156, 227
Tru1I TTAA 2 cut(s) 147, 314
Tru9I TTAA 2 cut(s) 147, 314
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 3 cut(s) 76, 83, 227
XmnI GAANNNNTTC 2 cut(s) 195, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.