pycom10g19210

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001730
Physical Location & Seq
Reverse (-)
22352880 .. 22354437
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19210.2

Sequence Viewer

Length: 450 bp
ATGGAGGAAGAGAAGCAGCAGAGTATTAAGGAGGAGGAGGAGGAGCGTCCAGTGAGAGTATATGCAGACGGCATTTATGATCTCTTTCACTTCGGCCATGCCCGTTCTCTCGAGCAAGCCAAGAAGCTGTTCCCCAATACGTATCTGCTTGTTGGCTGCTGTGGTGATGAAATTACGCACAACTATAAGGGAAAAACTGTTATGACTGAGAAGGAGCGCTATGAATCACTCCGCCATTGCAGATGGGTGGACGAAGTTATCCCTGATGCACCATGGGTGCTCTCGCAAGAGTTTCTCGACAAGCATAAGATTGACTTTGTGGCACATGACTCTCTTCCCTATGCTGATGCAAGTGGCTCTGGAAAGGATGTCTATGAATTTGTTAAGTCTGTTGGGAAGTTTAAAGAAACAAAGCGAACTGATGGGATCGATCTACATCGGATCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

150

Amino Acids

17.36

Weight (kDa)

5.51

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 232
AclWI GGATC 2 cut(s) 434, 449
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 1 cut(s) 377
AfeI AGCGCT 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 2 cut(s) 434, 449
Ama87I CYCGRG 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 16, 156
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 28, 143
BccI CCATC 2 cut(s) 237, 416
BceAI ACGGC 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 220
BisI GCNGC 2 cut(s) 17, 157
BlsI GCNGC 2 cut(s) 18, 158
BmeT110I CYCGRG 1 cut(s) 110
BmsI GCATC 2 cut(s) 256, 337
Bsa29I ATCGAT 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 435
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 435
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 4 cut(s) 47, 50, 53, 56
BseXI GCAGC 2 cut(s) 28, 143
BshFI GGCC 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 110
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 4 cut(s) 79, 426, 430, 441
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 429
BspPI GGATC 2 cut(s) 434, 449
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 4 cut(s) 79, 426, 430, 441
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 3, 339
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 373
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 4 cut(s) 82, 429, 433, 444
BstMBI GATC 4 cut(s) 79, 426, 430, 441
BstSNI TACGTA 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 28, 143
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 219
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 1 cut(s) 35
CviAII CATG 3 cut(s) 98, 273, 326
CviJI RGCY 5 cut(s) 96, 119, 127, 156, 357
CviKI_1 RGCY 5 cut(s) 96, 119, 127, 156, 357
DdeI CTNAG 1 cut(s) 207
DpnI GATC 4 cut(s) 81, 428, 432, 443
DpnII GATC 4 cut(s) 79, 426, 430, 441
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 3, 339
EarI CTCTTC 2 cut(s) 3, 339
EciI GGCGGA 1 cut(s) 221
Eco105I TACGTA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 3 cut(s) 101, 276, 329
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 3 cut(s) 97, 272, 325
Fnu4HI GCNGC 2 cut(s) 17, 157
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 17, 157
GlaI GCGC 1 cut(s) 218
GluI GCNGC 2 cut(s) 17, 157
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 96
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 101, 276, 329
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 2 cut(s) 224, 329
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 3 cut(s) 110, 296, 360
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 65, 240, 269, 350
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 101, 276, 329
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 4 cut(s) 79, 426, 430, 441
LmnI GCTCC 2 cut(s) 43, 214
LpnPI CCDG 3 cut(s) 63, 276, 345
Lsp1109I GCAGC 2 cut(s) 28, 143
LweI GCATC 2 cut(s) 256, 337
MaeII ACGT 1 cut(s) 140
MalI GATC 4 cut(s) 81, 428, 432, 443
MboI GATC 4 cut(s) 79, 426, 430, 441
MboII GAAGA 2 cut(s) 20, 326
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 2 cut(s) 171, 377
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 4 cut(s) 25, 28, 31, 34
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 27, 384, 402
NcoI CCATGG 1 cut(s) 272
NdeII GATC 4 cut(s) 79, 426, 430, 441
NlaIII CATG 3 cut(s) 101, 276, 329
PaeR7I CTCGAG 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 18, 158
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 141
PsuI RGATCY 1 cut(s) 441
SaqAI TTAA 3 cut(s) 27, 384, 402
SatI GCNGC 2 cut(s) 17, 157
Sau3AI GATC 4 cut(s) 79, 426, 430, 441
SchI GAGTC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 282
SetI ASST 2 cut(s) 129, 143
SfaNI GCATC 2 cut(s) 256, 337
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SnaBI TACGTA 1 cut(s) 141
Sse9I AATT 2 cut(s) 171, 377
SsiI CCGC 1 cut(s) 232
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 111, 297, 429
TasI AATT 2 cut(s) 171, 377
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 27, 384, 402
Tru9I TTAA 3 cut(s) 27, 384, 402
TscAI CASTG 1 cut(s) 57
TseI GCWGC 2 cut(s) 16, 156
TspDTI ATGAA 3 cut(s) 183, 237, 390
TspRI CASTG 1 cut(s) 57
XapI RAATTY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.