pycom05g22390

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0001730
Physical Location & Seq
Reverse (-)
24749382 .. 24752365
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22390.4

Sequence Viewer

Length: 855 bp
ATGGAGGAAGAGAAGCAGCAGAGTGTTGAGGAGGAGGAGCGTCCAGTAAGAGTCTATGCAGACGGCATTTATGATCTCTTTCACTTCGGCCATGCCCGTTCTCTCGAGCAAGCCAAGAAGCTGTTTCCGAACACGTACCTGCTTGTTGGCTGCTGTGGTGATGAAATTACCCACAGTTATAAGGGAAAAACTGTTATGACTGAGAAGGAGCGCTATGAATCGCTCCGCCATTGCAGATGGGTGGATGAAGTTATCCCCGACGCACCATGGGTGCTCTCGCAAGAGTTTCTTGACAAGCACAAGATTGACTTTGTGGCACATGACTCTCTTCCCTATGCTGATGCAAGTGGCTCTGGAAAGGATGTCTATGAGTTTGTTAAGTCCGTTGGTAAGTTTAAGGAAACAAAGCGAACTGATGGGATCTCTACATCAGATCTCATAATGAGGATAGTTAAAGATTACAACCAGTATGTGATGCGTAATTTGGACCGCGGGTACACGAGAAAGGATCTAGGTGTTAGCTATGTGAGGGAAAAGCGACTGAGAGTGAACATGGGATTGAAAAGATTGCGTGAAAGGGTCAAGGAGCACCAAGAAAAAGTAGGAGAGAAGATACAAATAGTAACACAAACTGCCACAATGCGTCGTAATGAATGGGTGGAGAATGCTGACAGGCTGGTTGCTGGATTTCTTGAGAGGTTTGAAGAAGGTTTCCATAAAATGGGAACAGCCATAAGGGACCGAATTCAAAAGCGAATAAGGAAGCAGCAGTTCAGAGGGCTTTTATATGAAGAAGAAGATGATGAATTCTATGATGACTCTGAAGAAGAAAACGAGGATGAAGACGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

285

Amino Acids

33.69

Weight (kDa)

5.48

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 721
AccII CGCG 1 cut(s) 492
AciI CCGC 3 cut(s) 226, 490, 492
AclWI GGATC 2 cut(s) 428, 516
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 744, 806
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 2 cut(s) 137, 497
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 721
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 562, 704, 749
AluBI AGCT 2 cut(s) 121, 522
AluI AGCT 2 cut(s) 121, 522
Alw21I GWGCWC 2 cut(s) 276, 591
AlwI GGATC 2 cut(s) 428, 516
Ama87I CYCGRG 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 16, 150, 766
ApoI RAATTY 2 cut(s) 744, 806
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 487, 739
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 487, 739
BauI CACGAG 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 2 cut(s) 276, 591
BbvI GCAGC 3 cut(s) 28, 137, 778
BccI CCATC 2 cut(s) 231, 410
BceAI ACGGC 1 cut(s) 79
BfaI CTAG 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 433
BisI GCNGC 3 cut(s) 17, 151, 767
BlsI GCNGC 3 cut(s) 18, 152, 768
Bme18I GGWCC 2 cut(s) 487, 739
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 487, 739
BmiI GGNNCC 1 cut(s) 740
BmsI GCATC 2 cut(s) 331, 465
BpiI GAAGAC 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 266, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 44, 466
Bse3DI GCAATG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 266, 490
BseGI GGATG 3 cut(s) 250, 367, 844
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 192, 533
BseNI ACTGG 2 cut(s) 44, 466
BseRI GAGGAG 3 cut(s) 44, 47, 50
BseXI GCAGC 3 cut(s) 28, 137, 778
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 276, 591
BsiHKCI CYCGRG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 1 cut(s) 721
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 276, 591
Bsp143I GATC 4 cut(s) 73, 420, 433, 508
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 3 cut(s) 226, 490, 492
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 193, 534
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 740
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 428, 516
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 2 cut(s) 44, 466
BssECI CCNNGG 2 cut(s) 266, 490
BssMI GATC 4 cut(s) 73, 420, 433, 508
BssSI CACGAG 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 176, 193
Bst6I CTCTTC 2 cut(s) 3, 333
BstBAI YACGTR 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 201, 542
BstDSI CCRYGG 2 cut(s) 266, 490
BstF5I GGATG 3 cut(s) 250, 367, 844
BstFNI CGCG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 4 cut(s) 76, 423, 436, 511
BstMBI GATC 4 cut(s) 73, 420, 433, 508
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 28, 137, 778
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 3 cut(s) 420, 433, 508
BstYI RGATCY 3 cut(s) 420, 433, 508
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 2 cut(s) 266, 490
BtsCI GGATG 3 cut(s) 250, 367, 844
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 487, 739
Cfr42I CCGCGG 1 cut(s) 493
CseI GACGC 3 cut(s) 29, 269, 632
Csp6I GTAC 2 cut(s) 136, 496
CviAII CATG 4 cut(s) 92, 267, 320, 553
CviJI RGCY 9 cut(s) 90, 113, 121, 150, 351, 522, 676, 731, 781
CviKI_1 RGCY 9 cut(s) 90, 113, 121, 150, 351, 522, 676, 731, 781
CviQI GTAC 2 cut(s) 136, 496
DdeI CTNAG 2 cut(s) 201, 542
DpnI GATC 4 cut(s) 75, 422, 435, 510
DpnII GATC 4 cut(s) 73, 420, 433, 508
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 3, 333
EarI CTCTTC 2 cut(s) 3, 333
EciI GGCGGA 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 487, 739
Eco47III AGCGCT 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 104
EcoRI GAATTC 2 cut(s) 744, 806
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 4 cut(s) 95, 270, 323, 556
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 293, 325
FaqI GGGAC 1 cut(s) 752
FatI CATG 4 cut(s) 91, 266, 319, 552
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 17, 151, 767
FokI GGATG 3 cut(s) 257, 374, 851
Fsp4HI GCNGC 3 cut(s) 17, 151, 767
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 212
GluI GCNGC 3 cut(s) 17, 151, 767
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 3 cut(s) 29, 269, 632
HhaI GCGC 1 cut(s) 213
Hin1II CATG 4 cut(s) 95, 270, 323, 556
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 4 cut(s) 51, 218, 323, 818
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 498, 550
Hpy188I TCNGA 4 cut(s) 129, 433, 776, 823
Hpy188III TCNNGA 4 cut(s) 104, 290, 354, 692
Hpy8I GTNNAC 2 cut(s) 498, 550
Hpy99I CGWCG 2 cut(s) 263, 648
HpyAV CCTTC 2 cut(s) 199, 701
HpyCH4III ACNGT 2 cut(s) 176, 193
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 59, 234, 344
HpyF3I CTNAG 2 cut(s) 201, 542
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 4 cut(s) 95, 270, 323, 556
HspAI GCGC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 4 cut(s) 73, 420, 433, 508
LmnI GCTCC 4 cut(s) 37, 208, 228, 586
LpnPI CCDG 7 cut(s) 57, 152, 339, 479, 658, 662, 669
Lsp1109I GCAGC 3 cut(s) 28, 137, 778
LweI GCATC 2 cut(s) 331, 465
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 622
MalI GATC 4 cut(s) 75, 422, 435, 510
MboI GATC 4 cut(s) 73, 420, 433, 508
MflI RGATCY 3 cut(s) 420, 433, 508
MhlI GDGCHC 2 cut(s) 276, 591
MluCI AATT 4 cut(s) 165, 481, 744, 806
MlyI GAGTC 3 cut(s) 60, 317, 812
MnlI CCTC 8 cut(s) 22, 25, 28, 438, 522, 690, 770, 829
MseI TTAA 3 cut(s) 378, 396, 453
MspA1I CMGCKG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 670
MvnI CGCG 1 cut(s) 492
NcoI CCATGG 1 cut(s) 266
NdeII GATC 4 cut(s) 73, 420, 433, 508
NlaIII CATG 4 cut(s) 95, 270, 323, 556
NlaIV GGNNCC 1 cut(s) 740
PaeR7I CTCGAG 1 cut(s) 104
PctI GAATGC 1 cut(s) 670
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 3 cut(s) 18, 152, 768
PleI GAGTC 3 cut(s) 59, 317, 812
PpsI GAGTC 3 cut(s) 59, 317, 812
Ppu21I YACGTR 1 cut(s) 135
PsiI TTATAA 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 740
PspPI GGNCC 2 cut(s) 487, 739
PsuI RGATCY 3 cut(s) 420, 433, 508
RsaI GTAC 2 cut(s) 137, 497
RsaNI GTAC 2 cut(s) 136, 496
SacII CCGCGG 1 cut(s) 493
SaqAI TTAA 3 cut(s) 378, 396, 453
SatI GCNGC 3 cut(s) 17, 151, 767
Sau3AI GATC 4 cut(s) 73, 420, 433, 508
Sau96I GGNCC 2 cut(s) 487, 739
SchI GAGTC 3 cut(s) 60, 317, 812
SduI GDGCHC 2 cut(s) 276, 591
SetI ASST 7 cut(s) 123, 137, 141, 517, 524, 701, 712
SfaNI GCATC 2 cut(s) 331, 465
Sfr274I CTCGAG 1 cut(s) 104
Sfr303I CCGCGG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 2 cut(s) 487, 739
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 104, 692
SmoI CTYRAG 2 cut(s) 104, 692
Sse9I AATT 4 cut(s) 165, 481, 744, 806
SsiI CCGC 3 cut(s) 226, 490, 492
SspMI CTAG 1 cut(s) 512
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 176, 193
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 105
TaqII GACCGA 1 cut(s) 756
TasI AATT 4 cut(s) 165, 481, 744, 806
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 378, 396, 453
Tru9I TTAA 3 cut(s) 378, 396, 453
TseI GCWGC 3 cut(s) 16, 150, 766
TspDTI ATGAA 7 cut(s) 177, 231, 261, 666, 804, 819, 855
TspGWI ACGGA 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 2 cut(s) 487, 739
XapI RAATTY 2 cut(s) 744, 806
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.