Rroxscaffold_1G00057550

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001730
Physical Location & Seq
Reverse (-)
79520137 .. 79523049
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057550.1

Sequence Viewer

Length: 864 bp
ATGGAGGATCAGAAGAAGCAGAGGAGTGAGGAGGATCGACCTGTGAGAGTTTATGCAGATGGGATATATGATCTCTTTCACTTCGGACATGCCCGTTCTCTCGAGCAAGCCAAGAAATCGTTCCCAAATACGTACCTGCTTGTTGGCTGCTGCAATGATGAAGTTACTCACAATTACAAGGGCAAAACGGTTATGACCGACCAGGAGCGCTATGAATCACTCCGCCATTGCAAATGGGTGGATGAAGTTATACCTGATGCACCATGGGTTCTCACGCAAGAGTTTCTTGACAAACATCAGATCGACTATGTGGCCCATGATTCTCTTCCCTATGCTGATGCAAGTGGGGCTGGAAAGGATGTCTATGAATTTGTCAAGTCTGTTGGGAAGTTTAAGGAAACAAAGCGAACTGATGGTATCTCTACATCTGATATCATAATGAGGATTGTTAAAGATTACAACCAGTATGTGATGCGTAATTTGGACCGTGGGTACTCAAGAAAGGATCTAGGTGTTAGCTATGTGAGGGAAAAGCGGCTGAGAGTGAATATGGGACTGAAAAAACTACGTGAGAGGGTGAAGGAGCACCAAGAAAAAGTTGGAGAGAAGATACAAATTGTAGCCAAAATGCATCGTAATGAATGGGTGGAGAATGCTGACCGATTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGGAAGATTTATTTCAATATTTTCTACCAGGGAACAGTCATAAGGGACCGAATTCAAGAGGGAATGAGGAAGCAACAGTTAAAAAGGCTTTTATATGATCAAGACGATGATGATGAGCTATATGGTGATGACTTTGAAGAAGAAAACTATGATGAAGACGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

287

Amino Acids

34.07

Weight (kDa)

5.43

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 18 - 147 6.6e-33 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AciI CCGC 2 cut(s) 223, 535
AclWI GGATC 3 cut(s) 15, 42, 513
AcsI RAATTY 2 cut(s) 368, 747
AfaI GTAC 2 cut(s) 134, 494
AfeI AGCGCT 1 cut(s) 209
AgsI TTSAA 4 cut(s) 692, 712, 752, 833
AjnI CCWGG 2 cut(s) 201, 723
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 519, 814
AluI AGCT 2 cut(s) 519, 814
Alw21I GWGCWC 1 cut(s) 588
AlwI GGATC 3 cut(s) 15, 42, 513
Ama87I CYCGRG 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 147, 150
ApoI RAATTY 2 cut(s) 368, 747
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 3 cut(s) 313, 484, 742
AsuHPI GGTGA 2 cut(s) 589, 833
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 484, 742
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 134, 137
BccI CCATC 2 cut(s) 53, 407
BciT130I CCWGG 2 cut(s) 203, 725
BclI TGATCA 1 cut(s) 793
BfaI CTAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 3 cut(s) 148, 151, 536
BlsI GCNGC 3 cut(s) 149, 152, 537
Bme1390I CCNGG 2 cut(s) 203, 725
Bme18I GGWCC 2 cut(s) 484, 742
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 313, 484, 742
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 2 cut(s) 203, 725
BmsI GCATC 4 cut(s) 247, 328, 462, 640
BpiI GAAGAC 1 cut(s) 858
BpuEI CTTGAG 2 cut(s) 481, 701
BsaAI YACGTR 2 cut(s) 132, 569
BsaJI CCNNGG 3 cut(s) 263, 487, 724
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 2 cut(s) 160, 226
BseBI CCWGG 2 cut(s) 203, 725
BseDI CCNNGG 3 cut(s) 263, 487, 724
BseGI GGATG 2 cut(s) 247, 364
BseMI GCAATG 2 cut(s) 160, 226
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 37, 44
BseXI GCAGC 2 cut(s) 134, 137
BshFI GGCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 567, 755
BsmFI GGGAC 2 cut(s) 567, 755
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 6 cut(s) 7, 34, 70, 300, 505, 793
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 2 cut(s) 223, 535
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 743
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 3 cut(s) 15, 42, 513
BsrDI GCAATG 2 cut(s) 160, 226
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 3 cut(s) 263, 487, 724
BssMI GATC 6 cut(s) 7, 34, 70, 300, 505, 793
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 203, 725
Bst4CI ACNGT 4 cut(s) 190, 488, 733, 774
Bst6I CTCTTC 1 cut(s) 330
BstBAI YACGTR 2 cut(s) 132, 569
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 2 cut(s) 263, 487
BstF5I GGATG 2 cut(s) 247, 364
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 6 cut(s) 10, 37, 73, 303, 508, 796
BstMBI GATC 6 cut(s) 7, 34, 70, 300, 505, 793
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 2 cut(s) 203, 725
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 201, 723
BstSNI TACGTA 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 134, 137
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 2 cut(s) 263, 487
BtsCI GGATG 2 cut(s) 247, 364
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 313, 484, 742
Csp6I GTAC 2 cut(s) 133, 493
CviAII CATG 3 cut(s) 89, 264, 317
CviJI RGCY 9 cut(s) 110, 147, 314, 350, 519, 538, 623, 784, 814
CviKI_1 RGCY 9 cut(s) 110, 147, 314, 350, 519, 538, 623, 784, 814
CviQI GTAC 2 cut(s) 133, 493
DdeI CTNAG 1 cut(s) 539
DpnI GATC 6 cut(s) 9, 36, 72, 302, 507, 795
DpnII GATC 6 cut(s) 7, 34, 70, 300, 505, 793
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 212
Eco105I TACGTA 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 263
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 484, 742
Eco47III AGCGCT 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 2 cut(s) 201, 723
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 92, 267, 320
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 2 cut(s) 567, 755
FatI CATG 3 cut(s) 88, 263, 316
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 3 cut(s) 148, 151, 536
FokI GGATG 2 cut(s) 254, 371
Fsp4HI GCNGC 3 cut(s) 148, 151, 536
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 148, 151, 536
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 1 cut(s) 314
HhaI GCGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 92, 267, 320
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 2 cut(s) 215, 320
HphI GGTGA 2 cut(s) 589, 833
Hpy188I TCNGA 4 cut(s) 12, 86, 300, 430
Hpy188III TCNNGA 6 cut(s) 101, 287, 498, 680, 752, 797
HpyAV CCTTC 2 cut(s) 574, 689
HpyCH4III ACNGT 4 cut(s) 190, 488, 733, 774
HpyCH4IV ACGT 2 cut(s) 131, 568
HpyCH4V TGCA 6 cut(s) 56, 153, 231, 260, 341, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 131, 568
Hsp92II CATG 3 cut(s) 92, 267, 320
HspAI GCGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 6 cut(s) 7, 34, 70, 300, 505, 793
LmnI GCTCC 2 cut(s) 205, 583
Lsp1109I GCAGC 2 cut(s) 134, 137
LweI GCATC 4 cut(s) 247, 328, 462, 640
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 131, 568
MaeIII GTNAC 1 cut(s) 163
MalI GATC 6 cut(s) 9, 36, 72, 302, 507, 795
MboI GATC 6 cut(s) 7, 34, 70, 300, 505, 793
MboII GAAGA 8 cut(s) 25, 317, 619, 704, 712, 845, 848, 863
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 6 cut(s) 172, 368, 478, 615, 747, 859
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 8 cut(s) 15, 22, 25, 435, 519, 567, 748, 756
Mph1103I ATGCAT 1 cut(s) 633
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 4 cut(s) 393, 450, 776, 862
MslI CAYNNNNRTG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 203, 725
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 2 cut(s) 203, 725
MwoI GCNNNNNNNGC 1 cut(s) 347
NcoI CCATGG 1 cut(s) 263
NdeII GATC 6 cut(s) 7, 34, 70, 300, 505, 793
NlaIII CATG 3 cut(s) 92, 267, 320
NlaIV GGNNCC 1 cut(s) 743
NsiI ATGCAT 1 cut(s) 633
NspI RCATGY 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 101
PctI GAATGC 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 215, 320
PkrI GCNGC 3 cut(s) 149, 152, 537
Ppu21I YACGTR 2 cut(s) 132, 569
Psp6I CCWGG 2 cut(s) 201, 723
PspGI CCWGG 2 cut(s) 201, 723
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 3 cut(s) 313, 484, 742
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 2 cut(s) 134, 494
RsaNI GTAC 2 cut(s) 133, 493
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 4 cut(s) 393, 450, 776, 862
SatI GCNGC 3 cut(s) 148, 151, 536
Sau3AI GATC 6 cut(s) 7, 34, 70, 300, 505, 793
Sau96I GGNCC 3 cut(s) 313, 484, 742
ScrFI CCNGG 2 cut(s) 203, 725
SduI GDGCHC 1 cut(s) 588
SetI ASST 8 cut(s) 43, 134, 138, 256, 514, 521, 571, 816
SfaNI GCATC 4 cut(s) 247, 328, 462, 640
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 2 cut(s) 484, 742
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 3 cut(s) 101, 496, 680
SmoI CTYRAG 3 cut(s) 101, 496, 680
SnaBI TACGTA 1 cut(s) 132
Sse9I AATT 6 cut(s) 172, 368, 478, 615, 747, 859
SsiI CCGC 2 cut(s) 223, 535
SspI AATATT 1 cut(s) 715
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 2 cut(s) 201, 723
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 4 cut(s) 190, 488, 733, 774
TaiI ACGT 2 cut(s) 134, 571
TaqI TCGA 3 cut(s) 37, 102, 303
TaqII GACCGA 3 cut(s) 212, 675, 759
TasI AATT 6 cut(s) 172, 368, 478, 615, 747, 859
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 2 cut(s) 215, 320
Tru1I TTAA 4 cut(s) 393, 450, 776, 862
Tru9I TTAA 4 cut(s) 393, 450, 776, 862
TseI GCWGC 2 cut(s) 147, 150
TspDTI ATGAA 6 cut(s) 174, 228, 258, 381, 654, 864
VpaK11BI GGWCC 2 cut(s) 484, 742
XapI RAATTY 2 cut(s) 368, 747
XceI RCATGY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.