Rh7DG359000

Choline-phosphate cytidylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
47804266 .. 47807731
3466 bp
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UTR
Exon/CDS
Intron
Rh7DG359000.1

Sequence Viewer

Length: 528 bp
ATGAAAAAGTTTGATTCAACTCGGTGGGTGCTCGACTCCAACCAGCTTGGTAAGCTTCTCTCTATCCTCAATCTGTTTGAACTCTTAACTCCGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAATTGTTATGACGGAGTCCGAACGGTGGGTGGATGAAGTCATTCCTGATGCACCTTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAACATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGAAGAACGATTGAGGGTGAACATGAGGTTGAAAAAGTTAGGGTAGAAAGTGAAGGAACGTCAAGAAAAAGTAGGAGAAAAGACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

20.39

Weight (kDa)

8.47

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 32 - 130 1.6e-13 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 386, 408
Acc36I ACCTGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 2 cut(s) 230, 317
AfiI CCNNNNNNNGG 2 cut(s) 183, 336
AgsI TTSAA 3 cut(s) 18, 80, 470
AluBI AGCT 2 cut(s) 46, 55
AluI AGCT 2 cut(s) 46, 55
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 441
ApoI RAATTY 2 cut(s) 230, 317
Asp700I GAANNNNTTC 2 cut(s) 198, 231
AsuHPI GGTGA 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 2 cut(s) 291, 300
BfuAI ACCTGC 1 cut(s) 327
BmsI GCATC 3 cut(s) 121, 196, 277
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 336
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 2 cut(s) 196, 313
BseLI CCNNNNNNNGG 2 cut(s) 183, 336
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 183, 336
BsmAI GTCTC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 433
BspCNI CTCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 183, 524
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 196, 313
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 2 cut(s) 52, 296
BtsCI GGATG 2 cut(s) 196, 313
BveI ACCTGC 1 cut(s) 327
CviAII CATG 2 cut(s) 266, 461
CviJI RGCY 5 cut(s) 46, 55, 263, 299, 329
CviKI_1 RGCY 5 cut(s) 46, 55, 263, 299, 329
DdeI CTNAG 1 cut(s) 360
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraI TTTAAA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 369
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 269, 464
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 2 cut(s) 265, 460
FokI GGATG 2 cut(s) 203, 320
FspBI CTAG 2 cut(s) 291, 300
Hin1II CATG 2 cut(s) 269, 464
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 4 cut(s) 14, 35, 173, 269
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 223, 458
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 203, 236, 501
Hpy8I GTNNAC 2 cut(s) 223, 458
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 183, 524
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 2 cut(s) 126, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 296
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 2 cut(s) 269, 464
Kzo9I GATC 1 cut(s) 433
LpnPI CCDG 4 cut(s) 56, 216, 322, 425
LweI GCATC 3 cut(s) 121, 196, 277
MaeI CTAG 2 cut(s) 291, 300
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 425
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 2 cut(s) 239, 453
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 159, 230, 317
MlyI GAGTC 3 cut(s) 29, 182, 263
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 5 cut(s) 77, 355, 384, 445, 457
MroXI GAANNNNTTC 2 cut(s) 198, 231
MseI TTAA 3 cut(s) 86, 150, 342
MslI CAYNNNNRTG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 52, 296
NdeII GATC 1 cut(s) 433
NlaIII CATG 2 cut(s) 269, 464
PdmI GAANNNNTTC 2 cut(s) 198, 231
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 172
PleI GAGTC 3 cut(s) 29, 181, 263
PpsI GAGTC 3 cut(s) 29, 181, 263
PsiI TTATAA 2 cut(s) 386, 408
PsyI GACNNNGTC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 3 cut(s) 86, 150, 342
Sau3AI GATC 1 cut(s) 433
SchI GAGTC 3 cut(s) 29, 182, 263
SduI GDGCHC 1 cut(s) 33
SetI ASST 7 cut(s) 48, 57, 107, 214, 341, 468, 500
SfaNI GCATC 3 cut(s) 121, 196, 277
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 3 cut(s) 159, 230, 317
SspI AATATT 1 cut(s) 250
SspMI CTAG 2 cut(s) 291, 300
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 183, 524
TaiI ACGT 1 cut(s) 500
TaqI TCGA 3 cut(s) 33, 371, 377
TasI AATT 3 cut(s) 159, 230, 317
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 86, 150, 342
Tru9I TTAA 3 cut(s) 86, 150, 342
TspDTI ATGAA 3 cut(s) 17, 207, 330
TspGWI ACGGA 2 cut(s) 81, 185
Tth111I GACNNNGTC 1 cut(s) 172
XapI RAATTY 2 cut(s) 230, 317
XmnI GAANNNNTTC 2 cut(s) 198, 231
XspI CTAG 2 cut(s) 291, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.