Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001730

Physical Location & Seq

Genomic Coordinates Forward (+)

13697457 .. 13700648

Gene Structure 3192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGCAACGTTATCGGCGATCGCACTGAAGACGGCCTTTCCACCGCCGCTGCGGCCTCTGGCTCTACGGCTGTCCAGAGTTCTCCTCCCACTGATCGTCCTGTCCGCGTCTACGCCGATGGGATCTACGATCTTTTCCACTTTGGTCATGCTCGATCTCTCGAACAAGCCAAATTAGCGTTTCCAAACAACACTTACCTTCTTGTTGGATGTTGCAATGATGAGACTACCCATAAGTACAAGGGAAGGACTGTAATGACTGCAGAAGAGCGATATGAATCACTTCGACATTGCAAGTGGGTGGATGAAGTCATCCCTGATGCACCATGGGTGGTCAACCAGGAGTTTCTTGACAAGCACCAGATTGACTATGTTGCCCACGATTCTCTTCCCTATGCTGATTCAAGCGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGAAAGTTGGGAGGTTTAAGGAAACACAGCGAACTGAAGGAATATCGACCTCGGATATAATAATGAGAATAGTGAAAGATTACAATCAGTATGTCATGCGTAACTTGGATAGAGGATACTCAAGGGAAGATCTTGGAGTTAGCTTTGTCAAGGAAAAGAGACTTAGAGTTAATATGAGGCTAAAGAAACTCCAGGAGAGGGTCAAAGAACAACAAGAAAGAGTGGGAGAAAAGATCCAAACTGTAAAAATGCTGCGCAACGAGTGGGTAGAGAATGCAGATCGATGGGTCGCTGGATTTCTTGAAATATTTGAAGAAGGTTGCCATAAGATGGGAACTGCAATCGTAGACAGTATCCAAGAAAGGTTAATGAGACAAAAGTCGGCAGAGAGGCTGGAGAACGGTCAGGATGATGACACAGACGACCAGTTCTATGAAGAATACTTCGATCATGACATGGGTAGTGACGATGATGAAGATGAAAAATTCTACGACGAGGAAGAAGTAAAGGAAGAAGAGACAGAGAAAACTGTTATGACGGATGCTAAAGACAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004105 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

332

Amino Acids

38.49

Weight (kDa)

4.86

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	38 - 168	3.9e-31	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32260 AT2G32260
fragaria_vesca	FvH4_3g12780 FvH4_3g12780 FvH4_6g39470
malus_domestica	MD05G1247800.v1.1 MD09G1140000.v1.1 MD10G1228600.v1.1 MD17G1129400.v1.1
prunus_persica	Prupe.3G185600_v2.0.a1 Prupe.4G116200_v2.0.a1 Prupe.4G116200_v2.0.a1 Prupe.4G116200_v2.0.a1
pyrus_communis	pycom05g22390 pycom09g06100 pycom10g19210 pycom17g12190
rosa_chinensis	RchiOBHm_Chr1g0346781 RchiOBHm_Chr1g0358911 RchiOBHm_Chr1g0367521 RchiOBHm_Chr2g0103211 RchiOBHm_Chr2g0153491 RchiOBHm_Chr3g0475161 RchiOBHm_Chr4g0420211 RchiOBHm_Chr5g0020751
rosa_laevigata	RLG00000020701 RLG00000032558
rosa_multiflora	Rmu_sc0007649.1_g000014
rosa_roxburghii	Rroxscaffold_1G00057550 Rroxscaffold_2G00094990 Rroxscaffold_2G00123210
rosa_rugosa	Rorug02G0438300
rosa_samantha	Rh1AG069400 Rh1CG238600 Rh2AG502400 Rh3AG196900 Rh3BG226900 Rh5AG152500 Rh5AG349200 Rh5AG366700 Rh5AG385900 Rh5BG152200 Rh5DG151700 Rh7DG359000
rosa_wichuraiana	Rw0G004770 Rw2G041170 Rw3G022960 Rw5G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	695
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	111, 786
AccII	CGCG	1 cut(s)	108
AciI	CCGC	5 cut(s)	45, 48, 53, 106, 408
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	2 cut(s)	131, 667
AcsI	RAATTY	2 cut(s)	431, 923
AcuI	CTGAAG	2 cut(s)	48, 495
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	637, 769
AgsI	TTSAA	3 cut(s)	405, 743, 752
AjnI	CCWGG	2 cut(s)	339, 630
AluBI	AGCT	2 cut(s)	413, 582
AluI	AGCT	2 cut(s)	413, 582
Alw26I	GTCTC	4 cut(s)	218, 592, 805, 950
AlwI	GGATC	2 cut(s)	131, 667
AoxI	GGCC	2 cut(s)	34, 54
ApeKI	GCWGC	2 cut(s)	50, 691
ApoI	RAATTY	2 cut(s)	431, 923
AsiSI	GCGATCGC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	37, 678
BccI	CCATC	3 cut(s)	113, 717, 763
BceAI	ACGGC	2 cut(s)	49, 84
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	341, 632
BciVI	GTATCC	2 cut(s)	548, 803
BcoDI	GTCTC	4 cut(s)	218, 592, 805, 950
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	2 cut(s)	548, 803
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	4 cut(s)	48, 51, 54, 692
BlsI	GCNGC	4 cut(s)	49, 52, 55, 693
Bme1390I	CCNGG	2 cut(s)	341, 632
BmrFI	CCNGG	2 cut(s)	341, 632
BmsI	GCATC	2 cut(s)	310, 970
BoxI	GACNNNNGTC	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	2 cut(s)	614, 854
BpuEI	CTTGAG	1 cut(s)	544
Bsa29I	ATCGAT	1 cut(s)	721
BsaBI	GATNNNNATC	2 cut(s)	277, 522
BsaJI	CCNNGG	2 cut(s)	326, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 769
Bse1I	ACTGG	1 cut(s)	865
Bse3DI	GCAATG	2 cut(s)	223, 289
Bse8I	GATNNNNATC	2 cut(s)	277, 522
BseBI	CCWGG	2 cut(s)	341, 632
BseCI	ATCGAT	1 cut(s)	721
BseDI	CCNNGG	2 cut(s)	326, 489
BseGI	GGATG	6 cut(s)	215, 310, 312, 427, 853, 985
BseJI	GATNNNNATC	2 cut(s)	277, 522
BseLI	CCNNNNNNNGG	2 cut(s)	637, 769
BseMI	GCAATG	2 cut(s)	223, 289
BseNI	ACTGG	1 cut(s)	865
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	37, 678
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	36, 56
BshVI	ATCGAT	1 cut(s)	721
BsiEI	CGRYCG	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	637, 769
BsmAI	GTCTC	4 cut(s)	218, 592, 805, 950
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	36, 56
Bsp143I	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	5 cut(s)	45, 48, 53, 106, 408
BspANI	GGCC	2 cut(s)	36, 56
BspDI	ATCGAT	1 cut(s)	721
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	889
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	131, 667
BspQI	GCTCTTC	1 cut(s)	261
BsrDI	GCAATG	2 cut(s)	223, 289
BsrI	ACTGG	1 cut(s)	865
BssECI	CCNNGG	2 cut(s)	326, 489
BssMI	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	2 cut(s)	341, 632
Bst4CI	ACNGT	5 cut(s)	253, 682, 791, 842, 970
Bst6I	CTCTTC	3 cut(s)	261, 393, 948
BstDEI	CTNAG	1 cut(s)	602
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	6 cut(s)	215, 310, 312, 427, 853, 985
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	9 cut(s)	22, 97, 126, 133, 158, 571, 675, 721, 889
BstMAI	GTCTC	4 cut(s)	218, 592, 805, 950
BstMBI	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 176
BstNI	CCWGG	2 cut(s)	341, 632
BstPAI	GACNNNNGTC	1 cut(s)	817
BstSCI	CCNGG	2 cut(s)	339, 630
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	37, 678
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	3 cut(s)	123, 568, 672
BstYI	RGATCY	3 cut(s)	123, 568, 672
Bsu15I	ATCGAT	1 cut(s)	721
BsuI	GTATCC	2 cut(s)	548, 803
BsuRI	GGCC	2 cut(s)	36, 56
BsuTUI	ATCGAT	1 cut(s)	721
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	6 cut(s)	215, 310, 312, 427, 853, 985
BtsIMutI	CAGTG	2 cut(s)	24, 90
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	721
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	5 cut(s)	149, 327, 535, 890, 895
CviJI	RGCY	9 cut(s)	36, 56, 63, 71, 170, 413, 582, 619, 832
CviKI_1	RGCY	9 cut(s)	36, 56, 63, 71, 170, 413, 582, 619, 832
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	9 cut(s)	21, 96, 125, 132, 157, 570, 674, 720, 888
DpnII	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
Eam1104I	CTCTTC	3 cut(s)	261, 393, 948
EarI	CTCTTC	3 cut(s)	261, 393, 948
Eco130I	CCWWGG	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	48, 495
EcoRII	CCWGG	2 cut(s)	339, 630
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	5 cut(s)	152, 330, 538, 893, 898
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	5 cut(s)	148, 326, 534, 889, 894
FblI	GTMKAC	2 cut(s)	111, 786
Fnu4HI	GCNGC	4 cut(s)	48, 51, 54, 692
FokI	GGATG	6 cut(s)	222, 299, 317, 434, 860, 992
Fsp4HI	GCNGC	4 cut(s)	48, 51, 54, 692
FspI	TGCGCA	1 cut(s)	695
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	4 cut(s)	48, 51, 54, 692
GsuI	CTGGAG	2 cut(s)	614, 854
HaeIII	GGCC	2 cut(s)	36, 56
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	5 cut(s)	152, 330, 538, 893, 898
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	3 cut(s)	278, 383, 401
Hpy166II	GTNNAC	3 cut(s)	112, 337, 787
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	6 cut(s)	76, 161, 350, 740, 845, 890
Hpy8I	GTNNAC	3 cut(s)	112, 337, 787
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	4 cut(s)	209, 240, 470, 749
HpyCH4III	ACNGT	5 cut(s)	253, 682, 791, 842, 970
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	6 cut(s)	216, 263, 294, 323, 716, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 176
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	152, 330, 538, 893, 898
HspAI	GCGC	1 cut(s)	694
Kzo9I	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	2 cut(s)	37, 678
LweI	GCATC	2 cut(s)	310, 970
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	539, 902
MalI	GATC	9 cut(s)	21, 96, 125, 132, 157, 570, 674, 720, 888
MboI	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
MflI	RGATCY	3 cut(s)	123, 568, 672
MluCI	AATT	3 cut(s)	173, 431, 923
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	67, 96, 444, 499, 545, 609, 630, 822, 928
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	4 cut(s)	438, 456, 609, 806
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	341, 632
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	2 cut(s)	341, 632
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	53, 176
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
NlaIII	CATG	5 cut(s)	152, 330, 538, 893, 898
NmuCI	GTSAC	1 cut(s)	902
NsbI	TGCGCA	1 cut(s)	695
PagI	TCATGA	1 cut(s)	889
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	278, 383, 401
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	4 cut(s)	49, 52, 55, 693
Ple19I	CGATCG	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	817
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	339, 630
PspGI	CCWGG	2 cut(s)	339, 630
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	3 cut(s)	123, 568, 672
PvuI	CGATCG	1 cut(s)	22
RgaI	GCGATCGC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	438, 456, 609, 806
SatI	GCNGC	4 cut(s)	48, 51, 54, 692
Sau3AI	GATC	9 cut(s)	19, 94, 123, 130, 155, 568, 672, 718, 886
ScrFI	CCNGG	2 cut(s)	341, 632
SetI	ASST	8 cut(s)	12, 201, 415, 455, 491, 584, 760, 806
SfaAI	GCGATCGC	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	310, 970
SfcI	CTRYAG	1 cut(s)	261
SgfI	GCGATCGC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	3 cut(s)	173, 431, 923
SsiI	CCGC	5 cut(s)	45, 48, 53, 106, 408
SspI	AATATT	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	339, 630
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	5 cut(s)	253, 682, 791, 842, 970
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	6 cut(s)	154, 162, 286, 485, 721, 885
TasI	AATT	3 cut(s)	173, 431, 923
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	50, 56
TfiI	GAWTC	3 cut(s)	278, 383, 401
Tru1I	TTAA	4 cut(s)	438, 456, 609, 806
Tru9I	TTAA	4 cut(s)	438, 456, 609, 806
TscAI	CASTG	2 cut(s)	31, 97
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	2 cut(s)	50, 691
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	6 cut(s)	291, 321, 444, 888, 927, 933
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	2 cut(s)	31, 97
Van91I	CCANNNNNTGG	1 cut(s)	769
XapI	RAATTY	2 cut(s)	431, 923
XmiI	GTMKAC	2 cut(s)	111, 786
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.