Rw0G004770

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00181
OG0001730
Physical Location & Seq
Reverse (-)
9762 .. 12811
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004770.1

Sequence Viewer

Length: 573 bp
ATGGGATTGTGGAAGCCACTCTCACTCGATCTACTCTTCCCTTCTGATCAGGTCACCGTTCGGAGCTATGCTGATTTTGCAGGTTGGTGCCATTTTCAGTACGGCCATCTCAGACCCATAATACCACTCACTCTGGTGCAGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGCAAAACTGTTATGACGGAGTCCGAACGGTATGAATCTCTTTGCCATTGCAAGTATGATGATTTCTCTTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTATCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAACGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGATGAAGGAACATCAAGAAAAAGTAGGAGAAAAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

191

Amino Acids

22.27

Weight (kDa)

5.97

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 34 - 159 4.2e-20 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 473, 495
Acc36I ACCTGC 2 cut(s) 71, 414
AccB1I GGYRCC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 529
AclWI GGATC 1 cut(s) 528
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 2 cut(s) 317, 404
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 423
AjnI CCWGG 1 cut(s) 299
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 528
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 317, 404
Asp700I GAANNNNTTC 2 cut(s) 285, 318
AsuHPI GGTGA 1 cut(s) 46
BanI GGYRCC 1 cut(s) 87
BccI CCATC 1 cut(s) 114
BceAI ACGGC 2 cut(s) 118, 401
BciT130I CCWGG 1 cut(s) 301
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 3 cut(s) 378, 387, 533
BfuAI ACCTGC 2 cut(s) 71, 414
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 169, 283, 364
BsaJI CCNNGG 2 cut(s) 299, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 499
Bse3DI GCAATG 2 cut(s) 181, 247
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 299, 300
BseGI GGATG 2 cut(s) 283, 400
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMI GCAATG 2 cut(s) 181, 247
BseMII CTCAG 2 cut(s) 124, 438
BseNI ACTGG 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 28, 46, 520
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 123, 439
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 2 cut(s) 71, 414
BspPI GGATC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 87
BsrDI GCAATG 2 cut(s) 181, 247
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 2 cut(s) 299, 300
BssMI GATC 3 cut(s) 28, 46, 520
BssNAI GTATAC 1 cut(s) 530
Bst1107I GTATAC 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 58, 211, 231
Bst6I CTCTTC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 110, 447
BstEII GGTNACC 1 cut(s) 52
BstF5I GGATG 2 cut(s) 283, 400
BstKTI GATC 3 cut(s) 31, 49, 523
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 3 cut(s) 28, 46, 520
BstMWI GCNNNNNNNGC 2 cut(s) 77, 383
BstNI CCWGG 1 cut(s) 301
BstPI GGTNACC 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 530
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 283, 400
BveI ACCTGC 2 cut(s) 71, 414
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 353
CviJI RGCY 6 cut(s) 16, 66, 105, 350, 386, 416
CviKI_1 RGCY 6 cut(s) 16, 66, 105, 350, 386, 416
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 110, 447
DpnI GATC 3 cut(s) 30, 48, 522
DpnII GATC 3 cut(s) 28, 46, 520
DraI TTTAAA 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 299
EcoRV GATATC 1 cut(s) 456
FaeI CATG 1 cut(s) 356
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 529
FokI GGATG 2 cut(s) 290, 407
FspBI CTAG 3 cut(s) 378, 387, 533
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 1 cut(s) 356
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 221, 236, 356
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 310, 530
Hpy188I TCNGA 4 cut(s) 46, 63, 113, 226
Hpy188III TCNNGA 3 cut(s) 290, 323, 554
Hpy8I GTNNAC 2 cut(s) 310, 530
HpyAV CCTTC 2 cut(s) 51, 538
HpyCH4III ACNGT 3 cut(s) 58, 211, 231
HpyCH4V TGCA 5 cut(s) 80, 139, 174, 252, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 383
HpyF3I CTNAG 2 cut(s) 110, 447
Hsp92II CATG 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 28, 46, 520
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 8 cut(s) 35, 66, 119, 286, 303, 313, 409, 512
LweI GCATC 3 cut(s) 169, 283, 364
MaeI CTAG 3 cut(s) 378, 387, 533
MaeIII GTNAC 2 cut(s) 52, 512
MalI GATC 3 cut(s) 30, 48, 522
MboI GATC 3 cut(s) 28, 46, 520
MboII GAAGA 2 cut(s) 28, 326
MluCI AATT 2 cut(s) 317, 404
MlyI GAGTC 2 cut(s) 230, 350
MnlI CCTC 2 cut(s) 442, 471
MroXI GAANNNNTTC 2 cut(s) 285, 318
MseI TTAA 2 cut(s) 198, 429
MslI CAYNNNNRTG 2 cut(s) 134, 473
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 77, 383
NdeII GATC 3 cut(s) 28, 46, 520
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 52
OliI CACNNNNGTG 1 cut(s) 134
PasI CCCWGGG 1 cut(s) 300
PdmI GAANNNNTTC 2 cut(s) 285, 318
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 220
PleI GAGTC 2 cut(s) 229, 350
PpsI GAGTC 2 cut(s) 229, 350
PsiI TTATAA 2 cut(s) 473, 495
Psp6I CCWGG 1 cut(s) 299
PspEI GGTNACC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 134, 473
SaqAI TTAA 2 cut(s) 198, 429
Sau3AI GATC 3 cut(s) 28, 46, 520
SchI GAGTC 2 cut(s) 230, 350
ScrFI CCNGG 1 cut(s) 301
SetI ASST 5 cut(s) 54, 68, 85, 155, 428
SfaNI GCATC 3 cut(s) 169, 283, 364
SmiMI CAYNNNNRTG 2 cut(s) 134, 473
Sse9I AATT 2 cut(s) 317, 404
SspI AATATT 1 cut(s) 337
SspMI CTAG 3 cut(s) 378, 387, 533
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 3 cut(s) 58, 211, 231
TaqI TCGA 3 cut(s) 27, 458, 464
TasI AATT 2 cut(s) 317, 404
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 198, 429
Tru9I TTAA 2 cut(s) 198, 429
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 249, 294, 417, 557
TspGWI ACGGA 1 cut(s) 233
Tth111I GACNNNGTC 1 cut(s) 220
XapI RAATTY 2 cut(s) 317, 404
XmiI GTMKAC 1 cut(s) 529
XmnI GAANNNNTTC 2 cut(s) 285, 318
XspI CTAG 3 cut(s) 378, 387, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.