RchiOBHm_Chr1g0367521

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001730
Physical Location & Seq
Reverse (-)
57841756 .. 57843507
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59198

Sequence Viewer

Length: 648 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATAACATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCGAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAATTGTTATGACGGAGTCCGAACGGTATGAATCTCTTTGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAACATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGAACTTAACTCGACCTCCTACCCTCATTTTCGTTGTTGCAGCTTGGTTCTCCATACAAAGTCCCAGTTTTCTATTGCTCTCTCTCTTCACAAGTTTCTCTCAGAGAATAGGAGCAGGACGGAGGCTCAGTACATCACCGCGAAAACGTCAGAGTGGTGGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

215

Amino Acids

24.56

Weight (kDa)

9.31

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 137 1.8e-20 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 68, 407, 429
Acc36I ACCTGC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 463
AccII CGCG 1 cut(s) 622
AciI CCGC 1 cut(s) 620
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 4 cut(s) 76, 83, 251, 338
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 1 cut(s) 357
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 524
AluI AGCT 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 462
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 4 cut(s) 76, 83, 251, 338
Asp700I GAANNNNTTC 2 cut(s) 219, 252
AsuHPI GGTGA 1 cut(s) 609
BbvI GCAGC 1 cut(s) 533
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 3 cut(s) 312, 321, 467
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 4 cut(s) 54, 118, 217, 298
BmuI ACTGGG 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 233, 234
BsaXI ACNNNNNCTCC 4 cut(s) 481, 511, 595, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 2 cut(s) 433, 546
Bse3DI GCAATG 2 cut(s) 130, 196
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 3 cut(s) 45, 217, 334
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 2 cut(s) 130, 196
BseMII CTCAG 3 cut(s) 372, 596, 622
BseNI ACTGG 2 cut(s) 433, 546
BseXI GCAGC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 622
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 528
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 1 cut(s) 620
BspCNI CTCAG 3 cut(s) 373, 595, 621
BspFNI CGCG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 462
BsrDI GCAATG 2 cut(s) 130, 196
BsrI ACTGG 2 cut(s) 433, 546
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 1 cut(s) 454
BssNAI GTATAC 1 cut(s) 464
Bst1107I GTATAC 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 381, 582, 608
BstF5I GGATG 3 cut(s) 45, 217, 334
BstFNI CGCG 1 cut(s) 622
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 1 cut(s) 533
BstZ17I GTATAC 1 cut(s) 464
BtsCI GGATG 3 cut(s) 45, 217, 334
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 39, 287
CviJI RGCY 5 cut(s) 284, 320, 350, 524, 607
CviKI_1 RGCY 5 cut(s) 284, 320, 350, 524, 607
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 3 cut(s) 381, 582, 608
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraI TTTAAA 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco32I GATATC 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 390
FaeI CATG 2 cut(s) 42, 290
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 528
FatI CATG 2 cut(s) 38, 286
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 3 cut(s) 32, 224, 341
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 3 cut(s) 312, 321, 467
GluI GCNGC 1 cut(s) 522
Hin1II CATG 2 cut(s) 42, 290
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 170, 185, 290
HphI GGTGA 1 cut(s) 609
Hpy166II GTNNAC 2 cut(s) 244, 464
Hpy188I TCNGA 4 cut(s) 82, 175, 585, 633
Hpy188III TCNNGA 2 cut(s) 224, 257
Hpy8I GTNNAC 2 cut(s) 244, 464
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 5 cut(s) 57, 123, 201, 230, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 381, 582, 608
HpySE526I ACGT 1 cut(s) 628
Hsp92II CATG 2 cut(s) 42, 290
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 593
LpnPI CCDG 8 cut(s) 73, 220, 237, 247, 343, 446, 559, 582
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 4 cut(s) 54, 118, 217, 298
MaeI CTAG 3 cut(s) 312, 321, 467
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 446
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 2 cut(s) 260, 559
MluCI AATT 6 cut(s) 29, 76, 83, 156, 251, 338
MlyI GAGTC 2 cut(s) 179, 284
MnlI CCTC 5 cut(s) 376, 405, 507, 515, 597
MroXI GAANNNNTTC 2 cut(s) 219, 252
MseI TTAA 3 cut(s) 147, 363, 488
MslI CAYNNNNRTG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 1 cut(s) 454
NlaIII CATG 2 cut(s) 42, 290
NspI RCATGY 1 cut(s) 42
PasI CCCWGGG 1 cut(s) 234
PciI ACATGT 1 cut(s) 38
PdmI GAANNNNTTC 2 cut(s) 219, 252
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 178, 284
PpsI GAGTC 2 cut(s) 178, 284
PscI ACATGT 1 cut(s) 38
PsiI TTATAA 3 cut(s) 68, 407, 429
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 147, 363, 488
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 1 cut(s) 454
SchI GAGTC 2 cut(s) 179, 284
ScrFI CCNGG 1 cut(s) 235
SetI ASST 6 cut(s) 92, 104, 362, 499, 526, 631
SfaNI GCATC 4 cut(s) 54, 118, 217, 298
SmiMI CAYNNNNRTG 1 cut(s) 407
Sse9I AATT 6 cut(s) 29, 76, 83, 156, 251, 338
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 271
SspMI CTAG 3 cut(s) 312, 321, 467
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 631
TaqI TCGA 4 cut(s) 73, 392, 398, 493
TasI AATT 6 cut(s) 29, 76, 83, 156, 251, 338
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 147, 363, 488
Tru9I TTAA 3 cut(s) 147, 363, 488
TseI GCWGC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 198, 228, 351
TspGWI ACGGA 2 cut(s) 182, 616
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 4 cut(s) 76, 83, 251, 338
XceI RCATGY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 219, 252
XspI CTAG 3 cut(s) 312, 321, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.