Rh5AG366700

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001730
Physical Location & Seq
Forward (+)
61985276 .. 61989509
4234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG366700.1

Sequence Viewer

Length: 300 bp
ATGACGGAGTCCGAACGGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

99

Amino Acids

11.66

Weight (kDa)

5.68

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 1 - 75 3.2e-12 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 221, 243
Acc36I ACCTGC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 277
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 65, 152
AfiI CCNNNNNNNGG 2 cut(s) 18, 171
AjnI CCWGG 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 276
ApoI RAATTY 2 cut(s) 65, 152
Asp700I GAANNNNTTC 2 cut(s) 33, 66
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 3 cut(s) 126, 135, 281
BfuAI ACCTGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 2 cut(s) 31, 112
BsaJI CCNNGG 2 cut(s) 47, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 171
Bse1I ACTGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 47, 48
BseGI GGATG 2 cut(s) 31, 148
BseLI CCNNNNNNNGG 2 cut(s) 18, 171
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 18, 171
BsmAI GTCTC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 47, 48
BssMI GATC 1 cut(s) 268
BssNAI GTATAC 1 cut(s) 278
Bst1107I GTATAC 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 18, 297
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 31, 148
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstZ17I GTATAC 1 cut(s) 278
BtsCI GGATG 2 cut(s) 31, 148
BveI ACCTGC 1 cut(s) 162
CviAII CATG 1 cut(s) 101
CviJI RGCY 3 cut(s) 98, 134, 164
CviKI_1 RGCY 3 cut(s) 98, 134, 164
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 47
EcoRV GATATC 1 cut(s) 204
FaeI CATG 1 cut(s) 104
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 277
FokI GGATG 2 cut(s) 38, 155
FspBI CTAG 3 cut(s) 126, 135, 281
Hin1II CATG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 2 cut(s) 8, 104
Hpy166II GTNNAC 2 cut(s) 58, 278
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 38, 71
Hpy8I GTNNAC 2 cut(s) 58, 278
HpyCH4III ACNGT 2 cut(s) 18, 297
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 34, 51, 61, 157, 260
LweI GCATC 2 cut(s) 31, 112
MaeI CTAG 3 cut(s) 126, 135, 281
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 74
MluCI AATT 2 cut(s) 65, 152
MlyI GAGTC 2 cut(s) 17, 98
MnlI CCTC 2 cut(s) 190, 219
MroXI GAANNNNTTC 2 cut(s) 33, 66
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 104
PasI CCCWGGG 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 33, 66
PflFI GACNNNGTC 1 cut(s) 7
PleI GAGTC 2 cut(s) 16, 98
PpsI GAGTC 2 cut(s) 16, 98
PsiI TTATAA 2 cut(s) 221, 243
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 2 cut(s) 17, 98
ScrFI CCNGG 1 cut(s) 49
SetI ASST 1 cut(s) 176
SfaNI GCATC 2 cut(s) 31, 112
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 2 cut(s) 65, 152
SspI AATATT 1 cut(s) 85
SspMI CTAG 3 cut(s) 126, 135, 281
StyD4I CCNGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 18, 297
TaqI TCGA 2 cut(s) 206, 212
TasI AATT 2 cut(s) 65, 152
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 42, 165
TspGWI ACGGA 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 7
XapI RAATTY 2 cut(s) 65, 152
XmiI GTMKAC 1 cut(s) 277
XmnI GAANNNNTTC 2 cut(s) 33, 66
XspI CTAG 3 cut(s) 126, 135, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.