FvH4_3g12780

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001730
Physical Location & Seq
Forward (+)
7657900 .. 7661713
3814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12780.t1

Sequence Viewer

Length: 852 bp
ATGGAGGATCGGAAGAAGAAGCAGAGTAGTGAGGAGGATCGACCTGTGAGAGTTTATGCAGATGGGATATATGATCTCTTTCACTTCGGCCATGCCCGTTCTCTCGAGCAAGCCAAGAAATCGTTCCCAAATACGTACCTGCTTGTTGGCTGCTGCAATGATGAAGTTACCCACAATTACAAGGGCAAAACTGTTATGACGGACGTGGAGCGCTATGAATCACTCCGCCACTGCAAATGGGTGGACGAAGTGATCCCTGATGCGCCATGGGTTCTCACGCAAGAGTTTCTTGACAAACATCAGATCGACTATGTGGCACATGATTCTCTTCCCTATGCTGATACAAGTGGGGCTGGAAAGGATGTCTATGAATTTGTCAAGTCTGTTGGGAAGTTTAAGGAAACAAAACGAACTGCTGGTATCTCTACATCTGATATCATAATGAGGATTGTCAAAGATTACAACCAGTATGTGATGCGCAATTTGGACCGTGGGTACTCAAGAAAGGATCTAGGTGTTAGCTATGTGAGGGAAAAGCGGCTGAGAGTGAATATGGGACTGAAAAAACTACGTGAGAGGGTGAAGGAGCAGCAAGAGAAAGTTGGGGAGAAGATACAAATTGTGGCCAAAATGCATCGTAATGAATGGGTGGAGAATGCTGACCGATTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTTCCATAAAATGGGAACAGTCATAAGAGACCGAATTCAAGAGGGAATAAGGAAGCAACAGTTAAAAAGGCTTTTATATGATGAAAATGACGATGACGAGCTATATGGTGATGACTTTGAAAACGAAAGCTATGATGAAGACGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

284

Amino Acids

33.38

Weight (kDa)

5.73

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 19 - 148 5.1e-32 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 712
AciI CCGC 2 cut(s) 226, 538
AclWI GGATC 4 cut(s) 15, 45, 247, 516
AcoI YGGCCR 2 cut(s) 88, 624
AcsI RAATTY 2 cut(s) 371, 735
AfaI GTAC 2 cut(s) 137, 497
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 3 cut(s) 695, 740, 821
AjiI CACGTC 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 522, 802, 831
AluI AGCT 3 cut(s) 522, 802, 831
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 4 cut(s) 15, 45, 247, 516
Ama87I CYCGRG 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 2 cut(s) 88, 624
ApeKI GCWGC 3 cut(s) 150, 153, 589
ApoI RAATTY 2 cut(s) 371, 735
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 213, 265, 480
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 592, 821
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 487
BalI TGGCCA 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 846
BbvI GCAGC 3 cut(s) 137, 140, 601
BccI CCATC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 4 cut(s) 151, 154, 539, 590
BlsI GCNGC 4 cut(s) 152, 155, 540, 591
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 487
BmsI GCATC 3 cut(s) 250, 465, 643
BpiI GAAGAC 1 cut(s) 846
BpuEI CTTGAG 2 cut(s) 484, 704
BsaAI YACGTR 2 cut(s) 135, 572
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 2 cut(s) 266, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 266, 490
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 3 cut(s) 137, 140, 601
BshFI GGCC 2 cut(s) 90, 626
BsiHKCI CYCGRG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 1 cut(s) 723
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 90, 626
Bso31I GGTCTC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 6 cut(s) 7, 37, 73, 252, 303, 508
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 2 cut(s) 226, 538
BspANI GGCC 2 cut(s) 90, 626
BspCNI CTCAG 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 4 cut(s) 15, 45, 247, 516
BspTNI GGTCTC 1 cut(s) 723
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 266, 490
BssMI GATC 6 cut(s) 7, 37, 73, 252, 303, 508
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 193, 491, 721, 762
Bst6I CTCTTC 1 cut(s) 333
BstBAI YACGTR 2 cut(s) 135, 572
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 542
BstDSI CCRYGG 2 cut(s) 266, 490
BstF5I GGATG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 3 cut(s) 213, 265, 480
BstKTI GATC 6 cut(s) 10, 40, 76, 255, 306, 511
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 6 cut(s) 7, 37, 73, 252, 303, 508
BstSNI TACGTA 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 137, 140, 601
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 2 cut(s) 90, 626
BtgI CCRYGG 2 cut(s) 266, 490
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 3 cut(s) 213, 265, 480
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 2 cut(s) 136, 496
CviAII CATG 3 cut(s) 92, 267, 320
CviQI GTAC 2 cut(s) 136, 496
DdeI CTNAG 1 cut(s) 542
DpnI GATC 6 cut(s) 9, 39, 75, 254, 305, 510
DpnII GATC 6 cut(s) 7, 37, 73, 252, 303, 508
EaeI YGGCCR 2 cut(s) 88, 624
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 215
Eco105I TACGTA 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 487
Eco47III AGCGCT 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 735
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 3 cut(s) 95, 270, 323
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 570
FatI CATG 3 cut(s) 91, 266, 319
Fnu4HI GCNGC 4 cut(s) 151, 154, 539, 590
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 151, 154, 539, 590
FspBI CTAG 1 cut(s) 512
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 3 cut(s) 212, 264, 479
GluI GCNGC 4 cut(s) 151, 154, 539, 590
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 2 cut(s) 90, 626
HhaI GCGC 3 cut(s) 213, 265, 480
Hin1II CATG 3 cut(s) 95, 270, 323
Hin6I GCGC 3 cut(s) 211, 263, 478
HinP1I GCGC 3 cut(s) 211, 263, 478
HinfI GANTC 2 cut(s) 218, 323
HphI GGTGA 2 cut(s) 592, 821
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 12, 303, 433
Hpy188III TCNNGA 5 cut(s) 104, 290, 501, 683, 740
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 577, 692
HpyCH4III ACNGT 4 cut(s) 193, 491, 721, 762
HpyCH4IV ACGT 3 cut(s) 134, 204, 571
HpyCH4V TGCA 4 cut(s) 59, 156, 234, 634
HpyF3I CTNAG 1 cut(s) 542
HpySE526I ACGT 3 cut(s) 134, 204, 571
Hsp92II CATG 3 cut(s) 95, 270, 323
HspAI GCGC 3 cut(s) 211, 263, 478
Kzo9I GATC 6 cut(s) 7, 37, 73, 252, 303, 508
LmnI GCTCC 2 cut(s) 208, 586
LpnPI CCDG 7 cut(s) 57, 152, 270, 339, 402, 479, 660
Lsp1109I GCAGC 3 cut(s) 137, 140, 601
LweI GCATC 3 cut(s) 250, 465, 643
MaeI CTAG 1 cut(s) 512
MaeII ACGT 3 cut(s) 134, 204, 571
MaeIII GTNAC 1 cut(s) 166
MalI GATC 6 cut(s) 9, 39, 75, 254, 305, 510
MboI GATC 6 cut(s) 7, 37, 73, 252, 303, 508
MboII GAAGA 6 cut(s) 25, 28, 320, 622, 707, 851
MflI RGATCY 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 6 cut(s) 175, 371, 481, 618, 735, 847
MluNI TGGCCA 1 cut(s) 626
MnlI CCTC 6 cut(s) 25, 28, 438, 522, 570, 736
Mox20I TGGCCA 1 cut(s) 626
Mph1103I ATGCAT 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 1 cut(s) 626
MseI TTAA 3 cut(s) 396, 764, 850
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 626
Mva1269I GAATGC 1 cut(s) 661
NcoI CCATGG 1 cut(s) 266
NdeII GATC 6 cut(s) 7, 37, 73, 252, 303, 508
NlaIII CATG 3 cut(s) 95, 270, 323
NsbI TGCGCA 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 636
PaeR7I CTCGAG 1 cut(s) 104
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 218, 323
PflMI CCANNNNNTGG 1 cut(s) 712
PkrI GCNGC 4 cut(s) 152, 155, 540, 591
Ppu21I YACGTR 2 cut(s) 135, 572
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 2 cut(s) 137, 497
RsaNI GTAC 2 cut(s) 136, 496
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 3 cut(s) 396, 764, 850
SatI GCNGC 4 cut(s) 151, 154, 539, 590
Sau3AI GATC 6 cut(s) 7, 37, 73, 252, 303, 508
Sau96I GGNCC 1 cut(s) 487
SfaNI GCATC 3 cut(s) 250, 465, 643
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 487
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 3 cut(s) 104, 499, 683
SmoI CTYRAG 3 cut(s) 104, 499, 683
SnaBI TACGTA 1 cut(s) 135
Sse9I AATT 6 cut(s) 175, 371, 481, 618, 735, 847
SsiI CCGC 2 cut(s) 226, 538
SspMI CTAG 1 cut(s) 512
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 4 cut(s) 193, 491, 721, 762
TaiI ACGT 3 cut(s) 137, 207, 574
TaqI TCGA 3 cut(s) 40, 105, 306
TaqII GACCGA 2 cut(s) 678, 747
TasI AATT 6 cut(s) 175, 371, 481, 618, 735, 847
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 2 cut(s) 218, 323
Tru1I TTAA 3 cut(s) 396, 764, 850
Tru9I TTAA 3 cut(s) 396, 764, 850
TscAI CASTG 1 cut(s) 236
TseI GCWGC 3 cut(s) 150, 153, 589
TspDTI ATGAA 6 cut(s) 177, 231, 384, 657, 798, 852
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 2 cut(s) 371, 735
XhoI CTCGAG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.