pycom09g06100

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001730
Physical Location & Seq
Forward (+)
4502126 .. 4505480
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06100.1

Sequence Viewer

Length: 1035 bp
ATGGCAGAGGTTGAGCCCAATCATACTAACGGCACCAGCAACGGCAGTACCAATTCGAATTCCAACCCCGCCGATCAGCCGGACCGCCTTGTTCGTGTCTACGCCGATGAGATCTACGATCTCTTCCACTTCGGCCACGCTCGCTCGCTCGAGCAGGCCAAGAAATCGTTCCCTAACACCTATCTCCTCGTCGGTTGTTGTAATGATGAAACCACTCACAAGTTCAAAGGCAAAACTGTCATGACAGAGTCTGAACGTTATGAATCTCTTCGCCATTGCAAGTGGGTAGATGAAGTCATTCCTGATGCACCTTGGGTGATCAATCAAGAATTTCTTGACAAGCATGAGATTGACTTTGTAGCCCATGACTCTCTACCTTATGCTGATGCAAGTGGAGCTGGGAAAGATGTGTACGAATTTGTCAAAGCCGTGGGAAGGTTTAAGGAAACAAAGAGAACTGATGGAATTTCAACATCGGACATTATAATGAGAATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTCGATCGTGGATATACAAGAAAAGAGCTTGGTGTTAGTTTCGTGAAGGAAAAGCGATTAAGGGTGAACTTGAGATTGAAGAAGTTACAAGAGAAAGTGAAGGAACATCAAGAAAAAGTTGGAGAGAAGGCTAGTTTCAAACTGTTGCTATGCATCGTAATGAATGGGTTGAAAATGCTCGATCGCTGGGTTGGTGGAGTACTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGGACAGCCATCAGAGATCGAATTCAAGAGAGCTTACGAGGGCAGCAGTCGGAAGAAAAATATCTGCTGGAAAATGGTAACGTGGACAGTGATGATGGACAAGAATATTACGATGAGGATGATGACGAAGAATACTACGACGATGAAGAATACTATGACGATGAAGAATATTATCAAGAGGTATACGGGAAAGATGGGAACAATGGGAACGAAAAGGAGAACGAAAAGGAGAAAAAGGAGGATGTGAAAGAAACGAATGTGAAAGTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

345

Amino Acids

40.04

Weight (kDa)

4.97

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 39 - 163 7.8e-31 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 485, 507
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 760
AccI GTMKAC 2 cut(s) 99, 945
AciI CCGC 2 cut(s) 69, 85
AclI AACGTT 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 5 cut(s) 58, 329, 416, 465, 783
AfaI GTAC 3 cut(s) 49, 413, 729
AfiI CCNNNNNNNGG 2 cut(s) 435, 760
AgsI TTSAA 7 cut(s) 226, 471, 607, 667, 700, 743, 788
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 398, 556, 795
AluI AGCT 3 cut(s) 398, 556, 795
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 133, 156
ApeKI GCWGC 1 cut(s) 805
ApoI RAATTY 5 cut(s) 58, 329, 416, 465, 783
Asp700I GAANNNNTTC 3 cut(s) 167, 267, 297
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 328, 604
AsuII TTCGAA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 817
BccI CCATC 4 cut(s) 455, 779, 851, 950
BceAI ACGGC 3 cut(s) 46, 58, 413
BclI TGATCA 1 cut(s) 318
BfaI CTAG 1 cut(s) 660
BglII AGATCT 1 cut(s) 111
BisI GCNGC 1 cut(s) 806
BlsI GCNGC 1 cut(s) 807
BmcAI AGTACT 1 cut(s) 729
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 3 cut(s) 295, 376, 690
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 619, 752
BsaJI CCNNGG 2 cut(s) 311, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 760
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 311, 429
BseGI GGATG 2 cut(s) 886, 1009
BseLI CCNNNNNNNGG 2 cut(s) 435, 760
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 511
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 817
BseYI CCCAGC 2 cut(s) 398, 714
Bsh1285I CGRYCG 2 cut(s) 535, 712
BshFI GGCC 2 cut(s) 135, 158
BshNI GGYRCC 1 cut(s) 32
BsiEI CGRYCG 2 cut(s) 535, 712
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 778
BslI CCNNNNNNNGG 2 cut(s) 435, 760
BsmFI GGGAC 1 cut(s) 778
BsnI GGCC 2 cut(s) 135, 158
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
BspACI CCGC 2 cut(s) 69, 85
BspANI GGCC 2 cut(s) 135, 158
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 311, 429
BssMI GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
BssNAI GTATAC 1 cut(s) 946
BssT1I CCWWGG 1 cut(s) 311
Bst1107I GTATAC 1 cut(s) 946
Bst4CI ACNGT 3 cut(s) 238, 672, 851
Bst6I CTCTTC 2 cut(s) 128, 273
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 142, 146, 156
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 886, 1009
BstKTI GATC 7 cut(s) 76, 114, 121, 321, 535, 712, 781
BstMBI GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
BstMCI CGRYCG 2 cut(s) 535, 712
BstMWI GCNNNNNNNGC 2 cut(s) 141, 395
BstV1I GCAGC 1 cut(s) 817
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 946
BsuRI GGCC 2 cut(s) 135, 158
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 886, 1009
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 142, 146, 156
CaiI CAGNNNCTG 1 cut(s) 251
CciI TCATGA 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 82
CpoI CGGWCCG 1 cut(s) 82
Csp6I GTAC 3 cut(s) 48, 412, 728
CspI CGGWCCG 1 cut(s) 82
CviAII CATG 3 cut(s) 241, 344, 365
CviQI GTAC 3 cut(s) 48, 412, 728
DpnI GATC 7 cut(s) 75, 113, 120, 320, 534, 711, 780
DpnII GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 128, 273
EarI CTCTTC 2 cut(s) 128, 273
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 149
EcoRI GAATTC 2 cut(s) 58, 783
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 3 cut(s) 244, 347, 368
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 778
FatI CATG 3 cut(s) 240, 343, 364
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 2 cut(s) 99, 945
Fnu4HI GCNGC 1 cut(s) 806
FokI GGATG 2 cut(s) 893, 1016
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 806
FspBI CTAG 1 cut(s) 660
GluI GCNGC 1 cut(s) 806
GsaI CCCAGC 2 cut(s) 402, 718
HaeIII GGCC 2 cut(s) 135, 158
HapII CCGG 1 cut(s) 80
Hin1II CATG 3 cut(s) 244, 347, 368
HinfI GANTC 3 cut(s) 248, 263, 368
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 328, 604
Hpy166II GTNNAC 5 cut(s) 100, 412, 595, 847, 946
Hpy188I TCNGA 4 cut(s) 253, 478, 776, 814
Hpy188III TCNNGA 8 cut(s) 241, 302, 326, 335, 571, 638, 788, 938
Hpy8I GTNNAC 5 cut(s) 100, 412, 595, 847, 946
Hpy99I CGWCG 2 cut(s) 194, 905
HpyAV CCTTC 5 cut(s) 429, 568, 622, 649, 740
HpyCH4III ACNGT 3 cut(s) 238, 672, 851
HpyCH4IV ACGT 2 cut(s) 256, 843
HpyCH4V TGCA 4 cut(s) 279, 308, 389, 681
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 395
HpySE526I ACGT 2 cut(s) 256, 843
Hsp92II CATG 3 cut(s) 244, 347, 368
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 8 cut(s) 49, 93, 140, 315, 384, 524, 700, 815
Lsp1109I GCAGC 1 cut(s) 817
LweI GCATC 3 cut(s) 295, 376, 690
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 256, 843
MaeIII GTNAC 3 cut(s) 524, 612, 839
MalI GATC 7 cut(s) 75, 113, 120, 320, 534, 711, 780
MboI GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
MboII GAAGA 8 cut(s) 115, 260, 619, 755, 827, 902, 920, 938
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 7 cut(s) 52, 58, 329, 416, 465, 492, 783
MlyI GAGTC 2 cut(s) 257, 362
MmeI TCCRAC 3 cut(s) 87, 628, 792
MnlI CCTC 5 cut(s) 197, 794, 871, 934, 994
Mph1103I ATGCAT 1 cut(s) 683
MroXI GAANNNNTTC 3 cut(s) 167, 267, 297
MseI TTAA 2 cut(s) 441, 587
MslI CAYNNNNRTG 2 cut(s) 485, 686
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 141, 395
NdeII GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
NlaIII CATG 3 cut(s) 244, 347, 368
NlaIV GGNNCC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 683
NspV TTCGAA 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 240
PdmI GAANNNNTTC 3 cut(s) 167, 267, 297
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 760
PkrI GCNGC 1 cut(s) 807
Ple19I CGATCG 2 cut(s) 535, 712
PleI GAGTC 2 cut(s) 256, 362
PpsI GAGTC 2 cut(s) 256, 362
PsiI TTATAA 2 cut(s) 485, 507
Psp1406I AACGTT 1 cut(s) 256
PspFI CCCAGC 2 cut(s) 398, 714
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 82
PspXI VCTCGAGB 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 247
PvuI CGATCG 2 cut(s) 535, 712
RsaI GTAC 3 cut(s) 49, 413, 729
RsaNI GTAC 3 cut(s) 48, 412, 728
RseI CAYNNNNRTG 2 cut(s) 485, 686
Rsr2I CGGWCCG 1 cut(s) 82
RsrII CGGWCCG 1 cut(s) 82
SaqAI TTAA 2 cut(s) 441, 587
SatI GCNGC 1 cut(s) 806
Sau3AI GATC 7 cut(s) 73, 111, 118, 318, 532, 709, 778
Sau96I GGNCC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 729
SchI GAGTC 2 cut(s) 257, 362
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 3 cut(s) 295, 376, 690
Sfr274I CTCGAG 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 485, 686
SmlI CTYRAG 3 cut(s) 149, 598, 731
SmoI CTYRAG 3 cut(s) 149, 598, 731
Sse9I AATT 7 cut(s) 52, 58, 329, 416, 465, 492, 783
SsiI CCGC 2 cut(s) 69, 85
SspI AATATT 2 cut(s) 869, 932
SspMI CTAG 1 cut(s) 660
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 3 cut(s) 238, 672, 851
TaiI ACGT 2 cut(s) 259, 846
TaqI TCGA 5 cut(s) 56, 150, 531, 708, 781
TasI AATT 7 cut(s) 52, 58, 329, 416, 465, 492, 783
TatI WGTACW 1 cut(s) 727
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 441, 587
Tru9I TTAA 2 cut(s) 441, 587
TscAI CASTG 1 cut(s) 856
TseI GCWGC 1 cut(s) 805
TspDTI ATGAA 6 cut(s) 222, 276, 306, 704, 921, 939
TspRI CASTG 1 cut(s) 856
Tth111I GACNNNGTC 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 5 cut(s) 58, 329, 416, 465, 783
XhoI CTCGAG 1 cut(s) 149
XmiI GTMKAC 2 cut(s) 99, 945
XmnI GAANNNNTTC 3 cut(s) 167, 267, 297
XspI CTAG 1 cut(s) 660
ZrmI AGTACT 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.