Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042825.1

Orthogroup ID

OG0009811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1186

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042825.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaacaagtttcagaagaatggcctcctctcgtttttctgcctcctccttttactcccaatcttcgcttccgctgagtgtacgtgcgacaaggccgaagatgaaggtgacagcaacaaaagcaaagctctcaaatacaaactcggcgcattcgcttccatactcgtcgccagtgcagtcggtgtttgtatcccaattctagggaagacaattccggctctgcaaccggacaagaatatcttcttcatcgtcaaggctttcgccgccggcgtcatcttggccaccggattcatccacgtgcttccggacgctttcgacaacttgacgtcgccgtgcctgaaaaaaaacccatgggggaagtttcccttcaccggatttgtggccatgatggcggccatcggaactttgatggtggattccattgctacttcttatttcagcaggtctcacttcaatacggctcagaatcagattaatggggatgaggagaaagagggacagcacgaggggcacgtacatgttcatacacatggcactcatggtcattctcatggttcgcttgatacgaattcggctgaatcacaacttcttcggcacagagtgatttcaaaggtgttggagttgggaattgtggtgcactcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

214

Amino Acids

23.15

Weight (kDa)

7.19

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05300 AT1G05300 AT2G32270
fragaria_vesca	FvH4_6g39460
malus_domestica	MD09G1140300.v1.1 MD09G1140500.v1.1
prunus_persica	Prupe.3G084700_v2.0.a1 Prupe.3G185300_v2.0.a1 Prupe.3G185500_v2.0.a1
pyrus_communis	pycom09g06120
rosa_chinensis	RchiOBHm_Chr2g0153481
rosa_laevigata	RLG00000020700
rosa_multiflora	Rmu_sc0003810.1_g000011 Rmu_sc0042825.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095000
rosa_rugosa	Rorug02G0438300
rosa_samantha	Rh2AG502300 Rh2BG513100 Rh2CG488200 Rh2DG524700
rosa_wichuraiana	Rw2G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	3 cut(s)	72, 264, 392
AcoI	YGGCCR	3 cut(s)	279, 381, 393
AcsI	RAATTY	1 cut(s)	568
AcvI	CACGTG	1 cut(s)	298
AcyI	GRCGYC	2 cut(s)	270, 326
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	2 cut(s)	82, 516
AfiI	CCNNNNNNNGG	2 cut(s)	200, 371
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	454, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	450
Alw44I	GTGCAC	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	5 cut(s)	22, 93, 279, 381, 393
ApaLI	GTGCAC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	568
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	119, 361
BaeGI	GKGCMC	2 cut(s)	513, 639
BalI	TGGCCA	2 cut(s)	281, 383
BauI	CACGAG	1 cut(s)	503
BbrPI	CACGTG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	3 cut(s)	382, 403, 404
BceAI	ACGGC	2 cut(s)	316, 474
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	2 cut(s)	264, 393
BlsI	GCNGC	2 cut(s)	265, 394
BpiI	GAAGAC	1 cut(s)	212
BsaAI	YACGTR	3 cut(s)	84, 298, 514
BsaHI	GRCGYC	2 cut(s)	270, 326
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	4 cut(s)	226, 284, 304, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 371
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	291, 487
BseLI	CCNNNNNNNGG	2 cut(s)	200, 371
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	66, 476
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	3 cut(s)	17, 35, 500
BseSI	GKGCMC	2 cut(s)	513, 639
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	5 cut(s)	24, 95, 281, 383, 395
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	6 cut(s)	215, 227, 267, 285, 305, 372
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	200, 371
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	5 cut(s)	24, 95, 281, 383, 395
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	513, 639
Bsp13I	TCCGGA	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	3 cut(s)	72, 264, 392
BspANI	GGCC	5 cut(s)	24, 95, 281, 383, 395
BspCNI	CTCAG	2 cut(s)	67, 475
BspEI	TCCGGA	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	350
BssNI	GRCGYC	2 cut(s)	270, 326
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	503
BstACI	GRCGYC	2 cut(s)	270, 326
BstBAI	YACGTR	3 cut(s)	84, 298, 514
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	75, 462
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	291, 487
BstHHI	GCGC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 263, 389, 508
BstNSI	RCATGY	1 cut(s)	521
BstSLI	GKGCMC	2 cut(s)	513, 639
BstV2I	GAAGAC	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	5 cut(s)	24, 95, 281, 383, 395
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	291, 487
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	266
CseI	GACGC	2 cut(s)	259, 317
Csp6I	GTAC	2 cut(s)	81, 515
CviAII	CATG	6 cut(s)	351, 385, 518, 530, 539, 551
CviQI	GTAC	2 cut(s)	81, 515
DdeI	CTNAG	2 cut(s)	75, 462
DraIII	CACNNNGTG	1 cut(s)	601
EaeI	YGGCCR	3 cut(s)	279, 381, 393
Eco130I	CCWWGG	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	450
Eco72I	CACGTG	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	6 cut(s)	354, 388, 521, 533, 542, 554
FaiI	YATR	8 cut(s)	161, 352, 386, 519, 525, 531, 540, 552
FalI	AAGNNNNNCTT	4 cut(s)	224, 256, 350, 382
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	6 cut(s)	350, 384, 517, 529, 538, 550
Fnu4HI	GCNGC	2 cut(s)	264, 393
FokI	GGATG	2 cut(s)	278, 494
Fsp4HI	GCNGC	2 cut(s)	264, 393
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	264, 393
HaeIII	GGCC	5 cut(s)	24, 95, 281, 383, 395
HapII	CCGG	6 cut(s)	215, 227, 267, 285, 305, 372
HgaI	GACGC	2 cut(s)	259, 317
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	2 cut(s)	270, 326
Hin1II	CATG	6 cut(s)	354, 388, 521, 533, 542, 554
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	288, 416, 466, 578
HpaII	CCGG	6 cut(s)	215, 227, 267, 285, 305, 372
HphI	GGTGA	2 cut(s)	119, 361
Hpy166II	GTNNAC	2 cut(s)	81, 637
Hpy188I	TCNGA	4 cut(s)	15, 401, 465, 471
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	81, 637
Hpy99I	CGWCG	2 cut(s)	170, 331
HpyAV	CCTTC	2 cut(s)	98, 376
HpyCH4IV	ACGT	4 cut(s)	83, 297, 326, 513
HpyCH4V	TGCA	3 cut(s)	176, 223, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 263, 389, 508
HpyF3I	CTNAG	2 cut(s)	75, 462
HpySE526I	ACGT	4 cut(s)	83, 297, 326, 513
Hsp92I	GRCGYC	2 cut(s)	270, 326
Hsp92II	CATG	6 cut(s)	354, 388, 521, 533, 542, 554
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	184, 228, 240, 280, 298, 318, 350, 385, 427
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	4 cut(s)	83, 297, 326, 513
MaeIII	GTNAC	1 cut(s)	107
MboII	GAAGA	7 cut(s)	28, 55, 110, 217, 232, 235, 581
MhlI	GDGCHC	2 cut(s)	513, 639
MlsI	TGGCCA	2 cut(s)	281, 383
MluCI	AATT	4 cut(s)	195, 210, 568, 627
MluNI	TGGCCA	2 cut(s)	281, 383
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	7 cut(s)	35, 38, 53, 56, 478, 487, 499
Mox20I	TGGCCA	2 cut(s)	281, 383
MreI	CGCCGGCG	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	2 cut(s)	281, 383
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	4 cut(s)	296, 516, 528, 549
Msp20I	TGGCCA	2 cut(s)	281, 383
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	6 cut(s)	215, 227, 267, 285, 305, 372
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	120, 263, 389, 508
NaeI	GCCGGC	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	350
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	6 cut(s)	354, 388, 521, 533, 542, 554
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	521
PciI	ACATGT	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	3 cut(s)	267, 510, 563
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	4 cut(s)	288, 416, 466, 578
PkrI	GCNGC	2 cut(s)	265, 394
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
Ppu21I	YACGTR	3 cut(s)	84, 298, 514
PscI	ACATGT	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	474
PspCI	CACGTG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	82, 516
RsaNI	GTAC	2 cut(s)	81, 515
RseI	CAYNNNNRTG	4 cut(s)	296, 516, 528, 549
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	2 cut(s)	264, 393
SduI	GDGCHC	2 cut(s)	513, 639
SetI	ASST	8 cut(s)	86, 109, 130, 300, 329, 446, 516, 615
SgrAI	CRCCGGYG	1 cut(s)	266
SmiMI	CAYNNNNRTG	4 cut(s)	296, 516, 528, 549
Sse9I	AATT	4 cut(s)	195, 210, 568, 627
SsiI	CCGC	3 cut(s)	72, 264, 392
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	350
TaiI	ACGT	4 cut(s)	86, 300, 329, 516
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	195, 210, 568, 627
TauI	GCSGC	2 cut(s)	266, 395
TfiI	GAWTC	4 cut(s)	288, 416, 466, 578
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	5 cut(s)	17, 117, 235, 280, 512
TspRI	CASTG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	635
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	568
XceI	RCATGY	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.