Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003810.1

Orthogroup ID

OG0009811

Physical Location & Seq

Genomic Coordinates Reverse (-)

38093 .. 39593

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003810.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgaacaagtttcagaagaatggcctcctctcgtttttctgcctcctccttttactcccaatcttcgcttccgctgagtgtacgtgcgaccccgaagatgaaggtgatagcaacaaaagcaaagctctcaaatacaaactcggcgcattcgcttccatactcgtcgccggtgcagtcggtgtttgtatcccaattctagggaagacaattccggctctgcaaccggacaaaaatatctttttcatcgtcaaggctttcgccgccggcgtcatattggccaccggattcatccacgtgcttccggacgctttcgacaacttgacgtcgccttgcctgaaagaaaacccatgggggaagtttcccttcaccggatttgtggccatgatggcggccatcggaactttgatggtggattccattgctacttcttatttcagcaggtctcacttcaatacggctcagaatcagattaatggggatgaggagaaagagggacagcacgaggggcacgtacatgttcatacacatggcactcatggtcattctcatggttcgcttgatactaattcggctgaatcacaacttcttcggcacagagtgatttcaaaggtgttggagttgggaattgtggtgcactcggtgattattggaatttcattgggtgcttctgaaagtcccgatacaattcgacctctcgtagctgctttgactttccatcaattttttgaaggcatgggacttggtgggtgcatagctcaggcgagagaatcgcgaataacaactataatcatggtgctgttcttctcccttacaacccctgttggaatcgcgattggaattggaatatcaagccattacaaggaaaacagtccagctgctctcatacttgaagggacttttaatgcggcatcagctgggatcttaatctacatgtctctggtcgatctgctagcggctgattttatgaacccgaaaatgcagaataatgtgaagcttcaaattggggctaatgcttcacttctttttggagcttgttgcatgtctatattggccaaatgggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

354

Amino Acids

37.83

Weight (kDa)

6.38

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05300 AT1G05300 AT2G32270
fragaria_vesca	FvH4_6g39460
malus_domestica	MD09G1140300.v1.1 MD09G1140500.v1.1
prunus_persica	Prupe.3G084700_v2.0.a1 Prupe.3G185300_v2.0.a1 Prupe.3G185500_v2.0.a1
pyrus_communis	pycom09g06120
rosa_chinensis	RchiOBHm_Chr2g0153481
rosa_laevigata	RLG00000020700
rosa_multiflora	Rmu_sc0003810.1_g000011 Rmu_sc0042825.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095000
rosa_rugosa	Rorug02G0438300
rosa_samantha	Rh2AG502300 Rh2BG513100 Rh2CG488200 Rh2DG524700
rosa_wichuraiana	Rw2G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	429
AccII	CGCG	2 cut(s)	772, 830
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	5 cut(s)	72, 261, 389, 905, 953
AclWI	GGATC	1 cut(s)	926
AcoI	YGGCCR	4 cut(s)	276, 378, 390, 1050
AcsI	RAATTY	1 cut(s)	651
AcvI	CACGTG	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	267, 323
AdeI	CACNNNGTG	2 cut(s)	598, 640
AfaI	GTAC	2 cut(s)	82, 513
AfiI	CCNNNNNNNGG	3 cut(s)	197, 368, 859
AflIII	ACRYGT	2 cut(s)	514, 930
AgsI	TTSAA	5 cut(s)	451, 606, 728, 890, 998
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	7 cut(s)	125, 701, 755, 875, 914, 994, 1031
AluI	AGCT	7 cut(s)	125, 701, 755, 875, 914, 994, 1031
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	2 cut(s)	447, 939
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	926
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	5 cut(s)	22, 276, 378, 390, 1050
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	2 cut(s)	701, 875
ApoI	RAATTY	1 cut(s)	651
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	116, 358, 652
AsuNHI	GCTAGC	1 cut(s)	949
BaeGI	GKGCMC	2 cut(s)	510, 636
BalI	TGGCCA	3 cut(s)	278, 380, 1052
BauI	CACGAG	1 cut(s)	500
BbrPI	CACGTG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	2 cut(s)	688, 862
BccI	CCATC	4 cut(s)	379, 400, 401, 723
BceAI	ACGGC	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	447, 939
BfaI	CTAG	2 cut(s)	197, 950
BfuAI	ACCTGC	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	197
BglI	GCCNNNNNGGC	2 cut(s)	386, 1058
BisI	GCNGC	6 cut(s)	261, 390, 702, 876, 906, 954
BlsI	GCNGC	6 cut(s)	262, 391, 703, 877, 907, 955
BmsI	GCATC	1 cut(s)	917
BmtI	GCTAGC	1 cut(s)	953
BpiI	GAAGAC	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	756
BsaAI	YACGTR	3 cut(s)	84, 295, 511
BsaBI	GATNNNNATC	1 cut(s)	923
BsaHI	GRCGYC	2 cut(s)	267, 323
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	4 cut(s)	223, 281, 301, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 368, 859
Bse118I	RCCGGY	2 cut(s)	167, 263
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	923
BseAI	TCCGGA	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	288, 484
BseJI	GATNNNNATC	1 cut(s)	923
BseLI	CCNNNNNNNGG	3 cut(s)	197, 368, 859
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	66, 473, 770
BseRI	GAGGAG	3 cut(s)	17, 35, 497
BseSI	GKGCMC	2 cut(s)	510, 636
BseXI	GCAGC	2 cut(s)	688, 862
BseYI	CCCAGC	1 cut(s)	914
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	772, 830
BshFI	GGCC	5 cut(s)	24, 278, 380, 392, 1052
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	7 cut(s)	168, 212, 224, 264, 282, 302, 369
BslFI	GGGAC	4 cut(s)	507, 660, 750, 907
BslI	CCNNNNNNNGG	3 cut(s)	197, 368, 859
BsmAI	GTCTC	2 cut(s)	447, 939
BsmFI	GGGAC	4 cut(s)	507, 660, 750, 907
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	5 cut(s)	24, 278, 380, 392, 1052
Bso31I	GGTCTC	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	510, 636
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	918, 943
Bsp19I	CCATGG	1 cut(s)	347
Bsp68I	TCGCGA	2 cut(s)	772, 830
BspACI	CCGC	5 cut(s)	72, 261, 389, 905, 953
BspANI	GGCC	5 cut(s)	24, 278, 380, 392, 1052
BspCNI	CTCAG	3 cut(s)	67, 472, 769
BspEI	TCCGGA	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	772, 830
BspMI	ACCTGC	1 cut(s)	429
BspOI	GCTAGC	1 cut(s)	953
BspPI	GGATC	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	2 cut(s)	167, 263
BssAI	RCCGGY	2 cut(s)	167, 263
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	918, 943
BssNI	GRCGYC	2 cut(s)	267, 323
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	869
BstACI	GRCGYC	2 cut(s)	267, 323
BstBAI	YACGTR	3 cut(s)	84, 295, 511
BstC8I	GCNNGC	2 cut(s)	265, 951
BstDEI	CTNAG	3 cut(s)	75, 459, 756
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	288, 484
BstFNI	CGCG	2 cut(s)	772, 830
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	921, 946
BstMAI	GTCTC	2 cut(s)	447, 939
BstMBI	GATC	2 cut(s)	918, 943
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 260, 386, 505, 911, 1058
BstNSI	RCATGY	3 cut(s)	518, 934, 1042
BstSLI	GKGCMC	2 cut(s)	510, 636
BstUI	CGCG	2 cut(s)	772, 830
BstV1I	GCAGC	2 cut(s)	688, 862
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	5 cut(s)	24, 278, 380, 392, 1052
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	288, 484
BtuMI	TCGCGA	2 cut(s)	772, 830
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	265, 951
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	167, 263
CseI	GACGC	2 cut(s)	256, 314
Csp6I	GTAC	2 cut(s)	81, 512
CviQI	GTAC	2 cut(s)	81, 512
DdeI	CTNAG	3 cut(s)	75, 459, 756
DpnI	GATC	2 cut(s)	920, 945
DpnII	GATC	2 cut(s)	918, 943
DraIII	CACNNNGTG	2 cut(s)	598, 640
EaeI	YGGCCR	4 cut(s)	276, 378, 390, 1050
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	447
Eco72I	CACGTG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	4 cut(s)	507, 660, 750, 907
Fnu4HI	GCNGC	6 cut(s)	261, 390, 702, 876, 906, 954
FokI	GGATG	2 cut(s)	275, 491
Fsp4HI	GCNGC	6 cut(s)	261, 390, 702, 876, 906, 954
FspBI	CTAG	2 cut(s)	197, 950
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	6 cut(s)	261, 390, 702, 876, 906, 954
GsaI	CCCAGC	1 cut(s)	918
HaeIII	GGCC	5 cut(s)	24, 278, 380, 392, 1052
HapII	CCGG	7 cut(s)	168, 212, 224, 264, 282, 302, 369
HgaI	GACGC	2 cut(s)	256, 314
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	267, 323
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	6 cut(s)	285, 413, 463, 575, 767, 825
HpaII	CCGG	7 cut(s)	168, 212, 224, 264, 282, 302, 369
HphI	GGTGA	3 cut(s)	116, 358, 652
Hpy166II	GTNNAC	2 cut(s)	81, 634
Hpy188I	TCNGA	5 cut(s)	15, 398, 462, 468, 670
Hpy188III	TCNNGA	4 cut(s)	302, 677, 771, 829
Hpy8I	GTNNAC	2 cut(s)	81, 634
Hpy99I	CGWCG	2 cut(s)	167, 328
HpyAV	CCTTC	4 cut(s)	95, 373, 722, 884
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4IV	ACGT	4 cut(s)	83, 294, 323, 510
HpyCH4V	TGCA	6 cut(s)	173, 220, 634, 750, 979, 1038
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 260, 386, 505, 911, 1058
HpyF3I	CTNAG	3 cut(s)	75, 459, 756
HpySE526I	ACGT	4 cut(s)	83, 294, 323, 510
Hsp92I	GRCGYC	2 cut(s)	267, 323
HspAI	GCGC	1 cut(s)	144
Kpn2I	TCCGGA	1 cut(s)	301
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	918, 943
LmnI	GCTCC	1 cut(s)	1028
Lsp1109I	GCAGC	2 cut(s)	688, 862
LweI	GCATC	1 cut(s)	917
MaeI	CTAG	2 cut(s)	197, 950
MaeII	ACGT	4 cut(s)	83, 294, 323, 510
MalI	GATC	2 cut(s)	920, 945
MboI	GATC	2 cut(s)	918, 943
MboII	GAAGA	6 cut(s)	28, 55, 107, 214, 578, 793
MflI	RGATCY	1 cut(s)	918
MhlI	GDGCHC	2 cut(s)	510, 636
MlsI	TGGCCA	3 cut(s)	278, 380, 1052
MluCI	AATT	9 cut(s)	192, 207, 565, 624, 651, 684, 719, 837, 999
MluNI	TGGCCA	3 cut(s)	278, 380, 1052
MmeI	TCCRAC	2 cut(s)	594, 802
MnlI	CCTC	8 cut(s)	35, 38, 53, 56, 475, 484, 496, 702
Mox20I	TGGCCA	3 cut(s)	278, 380, 1052
MreI	CGCCGGCG	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	301
MroNI	GCCGGC	1 cut(s)	263
MscI	TGGCCA	3 cut(s)	278, 380, 1052
MseI	TTAA	4 cut(s)	471, 900, 923, 1063
MslI	CAYNNNNRTG	4 cut(s)	293, 513, 525, 546
Msp20I	TGGCCA	3 cut(s)	278, 380, 1052
MspA1I	CMGCKG	3 cut(s)	74, 875, 914
MspI	CCGG	7 cut(s)	168, 212, 224, 264, 282, 302, 369
Mva1269I	GAATGC	1 cut(s)	146
MvnI	CGCG	2 cut(s)	772, 830
MwoI	GCNNNNNNNGC	6 cut(s)	117, 260, 386, 505, 911, 1058
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	918, 943
NgoMIV	GCCGGC	1 cut(s)	263
NheI	GCTAGC	1 cut(s)	949
NmeAIII	GCCGAG	1 cut(s)	120
NruI	TCGCGA	2 cut(s)	772, 830
NspI	RCATGY	3 cut(s)	518, 934, 1042
PciI	ACATGT	2 cut(s)	514, 930
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 507
PctI	GAATGC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	6 cut(s)	285, 413, 463, 575, 767, 825
PkrI	GCNGC	6 cut(s)	262, 391, 703, 877, 907, 955
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
Ppu21I	YACGTR	3 cut(s)	84, 295, 511
PscI	ACATGT	2 cut(s)	514, 930
PshBI	ATTAAT	1 cut(s)	471
PspCI	CACGTG	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	914
PsuI	RGATCY	1 cut(s)	918
PvuII	CAGCTG	2 cut(s)	875, 914
RruI	TCGCGA	2 cut(s)	772, 830
RsaI	GTAC	2 cut(s)	82, 513
RsaNI	GTAC	2 cut(s)	81, 512
RseI	CAYNNNNRTG	4 cut(s)	293, 513, 525, 546
SaqAI	TTAA	4 cut(s)	471, 900, 923, 1063
SatI	GCNGC	6 cut(s)	261, 390, 702, 876, 906, 954
Sau3AI	GATC	2 cut(s)	918, 943
SduI	GDGCHC	2 cut(s)	510, 636
SfaNI	GCATC	1 cut(s)	917
SgrAI	CRCCGGYG	2 cut(s)	167, 263
SmiMI	CAYNNNNRTG	4 cut(s)	293, 513, 525, 546
Sse9I	AATT	9 cut(s)	192, 207, 565, 624, 651, 684, 719, 837, 999
SsiI	CCGC	5 cut(s)	72, 261, 389, 905, 953
SspMI	CTAG	2 cut(s)	197, 950
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	869
TaiI	ACGT	4 cut(s)	86, 297, 326, 513
TaqI	TCGA	3 cut(s)	312, 688, 942
TasI	AATT	9 cut(s)	192, 207, 565, 624, 651, 684, 719, 837, 999
TauI	GCSGC	4 cut(s)	263, 392, 908, 956
TfiI	GAWTC	6 cut(s)	285, 413, 463, 575, 767, 825
Tru1I	TTAA	4 cut(s)	471, 900, 923, 1063
Tru9I	TTAA	4 cut(s)	471, 900, 923, 1063
TseI	GCWGC	2 cut(s)	701, 875
TspDTI	ATGAA	7 cut(s)	17, 114, 232, 277, 509, 645, 980
VneI	GTGCAC	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	651
XceI	RCATGY	3 cut(s)	518, 934, 1042
XspI	CTAG	2 cut(s)	197, 950
ZraI	GACGTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.