Prupe.3G153000_v2.0.a1

PB1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018125
Physical Location & Seq
Reverse (-)
16679336 .. 16679662
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G153000.1

Sequence Viewer

Length: 327 bp
ATGCACGAACACCAGCTCGCATACATTAGCGGCGACACCAAAATCATCGTCATAGATCGAAACATCAAGCTCGCCTCCTTCTGTGACACCTTGAACGATGTTGTCTACTTCAAGTATCAGGTCCCTGGCGAAGATCTCAACGCCTTCATCTCCGTCATCAACGACAAGAACCTCGACCACATGATCATCGAGTACTACCAGCTCTACCGCACTTTTGCTAAGCCCGCAAGGCTCAAGCTCTTCTTCTTCGCTCTCAGCAACAACCCCCTACTAACTTCGGCTCCAATGGGACCAGGTTGGAGCCCCAGTGGTTTAGCAACGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

109

Amino Acids

12.27

Weight (kDa)

6.24

Isoelectric Point (pI)

26.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AciI CCGC 3 cut(s) 30, 208, 225
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 2 cut(s) 94, 112
AjnI CCWGG 2 cut(s) 124, 292
AluBI AGCT 4 cut(s) 16, 70, 202, 238
AluI AGCT 4 cut(s) 16, 70, 202, 238
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AspS9I GGNCC 2 cut(s) 121, 290
AvaII GGWCC 2 cut(s) 121, 290
BanII GRGCYC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 126, 294
BclI TGATCA 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 229
BglII AGATCT 1 cut(s) 133
BisI GCNGC 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 126, 294
Bme18I GGWCC 2 cut(s) 121, 290
BmgT120I GGNCC 2 cut(s) 121, 290
BmiI GGNNCC 4 cut(s) 123, 282, 291, 302
BmrFI CCNGG 2 cut(s) 126, 294
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 4 cut(s) 265, 292, 295, 322
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 126, 294
BseDI CCNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 107, 303
BsmFI GGGAC 2 cut(s) 107, 303
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 3 cut(s) 55, 133, 183
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 3 cut(s) 30, 208, 225
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 4 cut(s) 123, 282, 291, 302
BspQI GCTCTTC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 3 cut(s) 55, 133, 183
Bst2UI CCWGG 2 cut(s) 126, 294
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 18, 72, 225
BstDEI CTNAG 2 cut(s) 219, 254
BstKTI GATC 3 cut(s) 58, 136, 186
BstMBI GATC 3 cut(s) 55, 133, 183
BstMWI GCNNNNNNNGC 2 cut(s) 224, 229
BstNI CCWGG 2 cut(s) 126, 294
BstSCI CCNGG 2 cut(s) 124, 292
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 18, 72, 225
Cfr13I GGNCC 2 cut(s) 121, 290
CsiI ACCWGGT 1 cut(s) 292
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 181
CviJI RGCY 8 cut(s) 16, 70, 202, 223, 232, 238, 281, 303
CviKI_1 RGCY 8 cut(s) 16, 70, 202, 223, 232, 238, 281, 303
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 219, 254
DpnI GATC 3 cut(s) 57, 135, 185
DpnII GATC 3 cut(s) 55, 133, 183
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 121, 290
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 124, 292
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 22, 53, 182
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 2 cut(s) 107, 303
FatI CATG 1 cut(s) 180
FauI CCCGC 1 cut(s) 232
FbaI TGATCA 1 cut(s) 183
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 88, 154
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 229
HpyF3I CTNAG 2 cut(s) 219, 254
Hsp92II CATG 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 3 cut(s) 55, 133, 183
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 286, 300
LpnPI CCDG 8 cut(s) 26, 104, 111, 138, 212, 279, 306, 319
MabI ACCWGGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 57, 135, 185
MboI GATC 3 cut(s) 55, 133, 183
MboII GAAGA 4 cut(s) 143, 232, 235, 238
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 2 cut(s) 85, 182
MspR9I CCNGG 2 cut(s) 126, 294
MvaI CCWGG 2 cut(s) 126, 294
MwoI GCNNNNNNNGC 2 cut(s) 224, 229
NdeII GATC 3 cut(s) 55, 133, 183
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 4 cut(s) 123, 282, 291, 302
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 124, 292
PspGI CCWGG 2 cut(s) 124, 292
PspN4I GGNNCC 4 cut(s) 123, 282, 291, 302
PspPI GGNCC 2 cut(s) 121, 290
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 245
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 3 cut(s) 55, 133, 183
Sau96I GGNCC 2 cut(s) 121, 290
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 126, 294
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 18, 72, 92, 123, 174, 204, 240, 298
SexAI ACCWGGT 1 cut(s) 292
SinI GGWCC 2 cut(s) 121, 290
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SsiI CCGC 3 cut(s) 30, 208, 225
StyD4I CCNGG 2 cut(s) 124, 292
TaqI TCGA 3 cut(s) 58, 174, 189
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 33
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 121, 290
XmiI GTMKAC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.