Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013245.1

Orthogroup ID

OG0018125

Physical Location & Seq

Genomic Coordinates Reverse (-)

37010 .. 38943

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013245.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggtgaaccggtggaatatttgctgtgagttgtatggagcttccggtggccggttcagtaggtttccagccggttcttgtggtgaggccaccggttctgaactcctgggatcgagttcttcaaggtgtaagctccccgacgaggatctcgatgccctcatctccgtcaccaacgatgaggacctcaaccatatgatgatcgagtacgaccgcctctatcgagcctccgctaagcccgcccgtctcaggctccaacaagtccaagtccgagcgctggtggttcatcaacaccttggccctttcagatctagtccccagaaggctcttttcccaccacttcggtctttgcctcctccaccaaccccgatttcctcttcggatttgacaagggatacgccgccgccgttcccgctgcgaaattgcctgattcggtcatgcctccgacgattcctgattcgcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

9.3

Isoelectric Point (pI)

78.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018125)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G153000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0186991
rosa_multiflora	Rmu_sc0001460.1_g000014 Rmu_sc0013245.1_g000012 Rmu_sc0042355.1_g000001 Rmu_ssc0000446.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051720
rosa_rugosa	Rorug07G0234600
rosa_samantha	Rh2AG361600 Rh5AG373200 Rh5CG407400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	211, 228, 237, 398, 401, 410
AclWI	GGATC	2 cut(s)	118, 153
AcoI	YGGCCR	1 cut(s)	49
AfaI	GTAC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	51, 142, 246, 274
AgeI	ACCGGT	2 cut(s)	9, 92
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	2 cut(s)	41, 133
AluI	AGCT	2 cut(s)	41, 133
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	118, 153
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	3 cut(s)	49, 87, 295
ApeKI	GCWGC	1 cut(s)	412
AsiGI	ACCGGT	2 cut(s)	9, 92
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	181, 296
AsuHPI	GGTGA	3 cut(s)	16, 95, 160
AvaII	GGWCC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	399
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	3 cut(s)	398, 401, 413
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	3 cut(s)	399, 402, 414
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	181, 296
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	106, 292
BsaWI	WCCGGW	3 cut(s)	9, 44, 92
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 142, 246, 274
Bse118I	RCCGGY	4 cut(s)	9, 51, 71, 92
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	106, 292
BseLI	CCNNNNNNNGG	4 cut(s)	51, 142, 246, 274
BseMII	CTCAG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	51, 89, 297
BshTI	ACCGGT	2 cut(s)	9, 92
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	5 cut(s)	10, 45, 52, 72, 93
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	51, 142, 246, 274
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	51, 89, 297
Bsp143I	GATC	4 cut(s)	110, 145, 198, 305
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	6 cut(s)	211, 228, 237, 398, 401, 410
BspANI	GGCC	3 cut(s)	51, 89, 297
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	2 cut(s)	118, 153
BsrFI	RCCGGY	4 cut(s)	9, 51, 71, 92
BssAI	RCCGGY	4 cut(s)	9, 51, 71, 92
BssECI	CCNNGG	2 cut(s)	106, 292
BssMI	GATC	4 cut(s)	110, 145, 198, 305
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	231, 245
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	4 cut(s)	113, 148, 201, 308
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	110, 145, 198, 305
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 409
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	145, 305
BstYI	RGATCY	2 cut(s)	145, 305
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	51, 89, 297
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	4 cut(s)	9, 51, 71, 92
Cfr13I	GGNCC	2 cut(s)	181, 296
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	2 cut(s)	9, 92
CviAII	CATG	1 cut(s)	435
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	231, 245
DpnI	GATC	4 cut(s)	112, 147, 200, 307
DpnII	GATC	4 cut(s)	110, 145, 198, 305
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	181
Eco47III	AGCGCT	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	438
FaiI	YATR	4 cut(s)	36, 192, 194, 436
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	1 cut(s)	434
FauI	CCCGC	2 cut(s)	244, 417
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	398, 401, 413
Fsp4HI	GCNGC	3 cut(s)	398, 401, 413
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	398, 401, 413
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	51, 89, 297
HapII	CCGG	5 cut(s)	10, 45, 52, 72, 93
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	438
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	3 cut(s)	427, 447, 454
HpaII	CCGG	5 cut(s)	10, 45, 52, 72, 93
HphI	GGTGA	3 cut(s)	16, 95, 160
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	5 cut(s)	100, 269, 305, 379, 443
Hpy188III	TCNNGA	2 cut(s)	149, 451
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	2 cut(s)	143, 447
HpyAV	CCTTC	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 409
HpyF3I	CTNAG	2 cut(s)	231, 245
Hsp92II	CATG	1 cut(s)	438
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	110, 145, 198, 305
LmnI	GCTCC	3 cut(s)	38, 138, 255
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	4 cut(s)	112, 147, 200, 307
MboI	GATC	4 cut(s)	110, 145, 198, 305
MboII	GAAGA	2 cut(s)	111, 366
MflI	RGATCY	2 cut(s)	145, 305
MluCI	AATT	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	277
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	5 cut(s)	10, 45, 52, 72, 93
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	236, 409
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	4 cut(s)	110, 145, 198, 305
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 401
PfeI	GAWTC	3 cut(s)	427, 447, 454
PinAI	ACCGGT	2 cut(s)	9, 92
PkrI	GCNGC	3 cut(s)	399, 402, 414
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	2 cut(s)	181, 296
PspPPI	RGGWCCY	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	145, 305
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SatI	GCNGC	3 cut(s)	398, 401, 413
Sau3AI	GATC	4 cut(s)	110, 145, 198, 305
Sau96I	GGNCC	2 cut(s)	181, 296
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	6 cut(s)	43, 65, 128, 135, 186, 294
SfaNI	GCATC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	6 cut(s)	211, 228, 237, 398, 401, 410
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	292
TaqI	TCGA	4 cut(s)	113, 150, 201, 220
TaqII	GACCGA	2 cut(s)	330, 420
TasI	AATT	1 cut(s)	418
TauI	GCSGC	2 cut(s)	400, 403
TfiI	GAWTC	3 cut(s)	427, 447, 454
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	181
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.