Rroxscaffold_1G00051720

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
72420697 .. 72423541
2845 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00051720.1

Sequence Viewer

Length: 174 bp
ATGCCTCGAATTCCGTTCAGATCCAGTCACCAGAAGGCTTTTCTCCCACCGCTCCGGCCTCTACCTCCTTCATCAACCCCGACGGATTGGACAAGGGATATGCCTGATTCCGCCCCTCCTCCGACGGTTCCTGATTCTCTTTTGAAGGCATTCCCGGCGACGACGTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.27

Weight (kDa)

9.97

Isoelectric Point (pI)

85.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 52
AciI CCGC 2 cut(s) 50, 111
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 164
AgsI TTSAA 1 cut(s) 145
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 20
BcnI CCSGG 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 55, 155
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 2 cut(s) 50, 111
BspANI GGCC 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 24
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 164
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 58
CviJI RGCY 2 cut(s) 38, 58
CviKI_1 RGCY 2 cut(s) 38, 58
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 9
FaiI YATR 2 cut(s) 101, 172
HaeIII GGCC 1 cut(s) 58
HapII CCGG 2 cut(s) 55, 155
Hin1I GRCGYC 1 cut(s) 164
HinfI GANTC 2 cut(s) 107, 134
HpaII CCGG 2 cut(s) 55, 155
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 20, 123
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 4 cut(s) 85, 127, 163, 166
HpyAV CCTTC 3 cut(s) 28, 78, 139
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 164
Hsp92I GRCGYC 1 cut(s) 164
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 37, 44, 68, 117, 144, 168
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 22
MbiI CCGCTC 1 cut(s) 52
MboI GATC 1 cut(s) 20
MflI RGATCY 1 cut(s) 20
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 5 cut(s) 15, 69, 75, 126, 129
MroXI GAANNNNTTC 1 cut(s) 149
MspI CCGG 2 cut(s) 55, 155
MspR9I CCNGG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 155
NdeII GATC 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 26
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 107, 134
PflFI GACNNNGTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 155
SetI ASST 2 cut(s) 67, 167
Sse9I AATT 1 cut(s) 9
SsiI CCGC 2 cut(s) 50, 111
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 9
TfiI GAWTC 2 cut(s) 107, 134
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 98
Tth111I GACNNNGTC 1 cut(s) 163
XapI RAATTY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 149
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.