Rorug07G0234600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018125
Physical Location & Seq
Forward (+)
21508580 .. 21509656
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0234600.1

Sequence Viewer

Length: 1077 bp
ATGCTTCAGTTTCAGTCCTTAGAGGACATGCAAAGGATTTGGTCTATTCGTACAGTAAGGCTGAAACAAGGGCTTCTGCGTCTGATAAAGTGGACTCCAAGCTTCTCTGCTGCGACCTTTAGAAACACGTTTGCACAAGTCTGGGTGCGACTTTGGGACCTGGGCTTTGCGTTTTGGGAGCAACAAACTATCTTCGAAATTGCTAGGGGGATTGGGATGCCCATGAAACTTGACCCTAGAACTGCTGATCGGTCTGTTGGTCTCTACCCGAGGGTTCTAATTGATGTCGACCTTTCTAAGCCTCTTCTTCAGCAACTGCGAGTGACCCGTGGAAATGGAGAACATGTTTTGGTGGGTATTGAATATGAAGCCCTTCCAAGTGTTTGTTCTAGGTGTGGCCTTGTTGGGCACTTAGGTGCCAAATGTAGGGTAGCGGTTCCTGTTGCTCCCACTGCTGACGCATCTCCTCAGCGTGGTCGCTCCTCCACTCGTAGGTCTAGAAGGAGGAGGGTGAAAGCTTCTGTTTCTGTTCCTCGCAGTCCGAATGTCCAACCTACAGCCTCTGAAGATTGTTCTTTTAGTAATGGTAATGTGCAACAAGTGCCTTCTGTTCAAGCTGCGGCAGCTTTGGAGACAAAAGTTGTGATTGGAACAGTTGAACAAATTATTAAAGAGTCTAATGTTGTGACTGAAAGGGTTGAACATAATTTGGTTGTGCAGCAGGCATCTGATCAAGACTCCTCTTTTGATAGTGTTCCACCTGGGTTTCAGAGGGTTACCCCAGAGAATTTGAAGCAGGCAAAGACTTTTGTTGTTCAATCTGCTAGCATCACTAATTCACCGGTGGTTGACACTACCAGTGGTGCTAATTTGGTATCTTCTGACTCTATTGCGGAACCGGCAAACCAGATACTTGAGGACCCTACCCTAACCAGGCAAGAAGGGGAATTTACGCCAGTAGTCTCAAAGAGAACCAAAAAACAGATTAAAAAGTCTAATTTGATAGTTGCAGTTCGTAAGTCTATTACAGGACGCGCTCTTGTGCAAAAGGGAGCGAAGCATAAATTATATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.55

Weight (kDa)

10.08

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 96 - 143 3.5e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 1035
AciI CCGC 3 cut(s) 434, 620, 893
AcsI RAATTY 2 cut(s) 787, 947
AcuI CTGAAG 2 cut(s) 293, 585
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 4 cut(s) 426, 473, 492, 933
AflIII ACRYGT 2 cut(s) 126, 343
AgeI ACCGGT 1 cut(s) 841
AgsI TTSAA 6 cut(s) 362, 614, 659, 701, 793, 818
AjnI CCWGG 3 cut(s) 159, 760, 932
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 4 cut(s) 102, 518, 617, 626
AluI AGCT 4 cut(s) 102, 518, 617, 626
Alw26I GTCTC 3 cut(s) 266, 626, 967
AlwNI CAGNNNCTG 2 cut(s) 316, 563
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 4 cut(s) 110, 617, 623, 718
ApoI RAATTY 2 cut(s) 787, 947
ArsI GACNNNNNNTTYG 4 cut(s) 149, 181, 728, 760
AsiGI ACCGGT 1 cut(s) 841
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 1037
AspS9I GGNCC 2 cut(s) 157, 919
AsuHPI GGTGA 2 cut(s) 523, 831
AsuII TTCGAA 1 cut(s) 195
AsuNHI GCTAGC 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 2 cut(s) 157, 919
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 4 cut(s) 97, 604, 635, 730
BciT130I CCWGG 3 cut(s) 161, 762, 934
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 3 cut(s) 266, 626, 967
BfaI CTAG 5 cut(s) 204, 237, 390, 498, 825
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 5 cut(s) 111, 618, 621, 624, 719
BlsI GCNGC 5 cut(s) 112, 619, 622, 625, 720
Bme1390I CCNGG 3 cut(s) 161, 762, 934
Bme18I GGWCC 2 cut(s) 157, 919
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 157, 919
BmiI GGNNCC 5 cut(s) 158, 418, 438, 897, 921
BmrFI CCNGG 3 cut(s) 161, 762, 934
BmsI GCATC 4 cut(s) 207, 470, 734, 837
BmtI GCTAGC 1 cut(s) 828
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 4 cut(s) 160, 269, 328, 761
BsaWI WCCGGW 1 cut(s) 841
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 4 cut(s) 426, 473, 492, 933
Bse118I RCCGGY 2 cut(s) 841, 898
Bse1I ACTGG 2 cut(s) 858, 956
BseBI CCWGG 3 cut(s) 161, 762, 934
BseDI CCNNGG 4 cut(s) 160, 269, 328, 761
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 426, 473, 492, 933
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 2 cut(s) 858, 956
BseRI GAGGAG 4 cut(s) 456, 472, 520, 730
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 4 cut(s) 97, 604, 635, 730
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 1 cut(s) 1035
BshFI GGCC 1 cut(s) 399
BshNI GGYRCC 1 cut(s) 416
BshTI ACCGGT 1 cut(s) 841
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 842, 899
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 426, 473, 492, 933
BsmAI GTCTC 3 cut(s) 266, 626, 967
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 399
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 2 cut(s) 247, 730
BspACI CCGC 3 cut(s) 434, 620, 893
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 1035
BspLI GGNNCC 5 cut(s) 158, 418, 438, 897, 921
BspOI GCTAGC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 2 cut(s) 841, 898
BsrI ACTGG 2 cut(s) 858, 956
BssAI RCCGGY 2 cut(s) 841, 898
BssECI CCNNGG 4 cut(s) 160, 269, 328, 761
BssMI GATC 2 cut(s) 247, 730
Bst2UI CCWGG 3 cut(s) 161, 762, 934
Bst4CI ACNGT 2 cut(s) 55, 655
Bst6I CTCTTC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 723, 798, 826
BstDEI CTNAG 4 cut(s) 19, 297, 412, 468
BstDSI CCRYGG 1 cut(s) 328
BstEII GGTNACC 1 cut(s) 775
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 1035
BstHHI GCGC 1 cut(s) 1037
BstKTI GATC 2 cut(s) 250, 733
BstMAI GTCTC 3 cut(s) 266, 626, 967
BstMBI GATC 2 cut(s) 247, 730
BstMWI GCNNNNNNNGC 4 cut(s) 452, 601, 623, 899
BstNI CCWGG 3 cut(s) 161, 762, 934
BstNSI RCATGY 2 cut(s) 31, 347
BstPI GGTNACC 1 cut(s) 775
BstSCI CCNGG 3 cut(s) 159, 760, 932
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 411
BstUI CGCG 1 cut(s) 1035
BstV1I GCAGC 4 cut(s) 97, 604, 635, 730
BsuRI GGCC 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 450, 865
Cac8I GCNNGC 3 cut(s) 723, 798, 826
CaiI CAGNNNCTG 2 cut(s) 316, 563
CfoI GCGC 1 cut(s) 1037
Cfr10I RCCGGY 2 cut(s) 841, 898
Cfr13I GGNCC 2 cut(s) 157, 919
CseI GACGC 3 cut(s) 68, 467, 1041
Csp6I GTAC 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 841
CviAII CATG 3 cut(s) 28, 223, 344
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 4 cut(s) 19, 297, 412, 468
DpnI GATC 2 cut(s) 249, 732
DpnII GATC 2 cut(s) 247, 730
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 157, 919
Eco57I CTGAAG 2 cut(s) 293, 585
Eco88I CYCGRG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 775
EcoO109I RGGNCCY 2 cut(s) 157, 919
EcoO65I GGTNACC 1 cut(s) 775
EcoRII CCWGG 3 cut(s) 159, 760, 932
FaeI CATG 3 cut(s) 31, 226, 347
FaiI YATR 7 cut(s) 29, 224, 345, 366, 705, 1062, 1069
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 27, 222, 343
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 111, 618, 621, 624, 719
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 5 cut(s) 111, 618, 621, 624, 719
FspBI CTAG 5 cut(s) 204, 237, 390, 498, 825
GlaI GCGC 1 cut(s) 1036
GluI GCNGC 5 cut(s) 111, 618, 621, 624, 719
HaeIII GGCC 1 cut(s) 399
HapII CCGG 2 cut(s) 842, 899
HgaI GACGC 3 cut(s) 68, 467, 1041
HhaI GCGC 1 cut(s) 1037
Hin1II CATG 3 cut(s) 31, 226, 347
Hin6I GCGC 1 cut(s) 1035
HinP1I GCGC 1 cut(s) 1035
HincII GTYRAC 2 cut(s) 289, 850
HindII GTYRAC 2 cut(s) 289, 850
HindIII AAGCTT 2 cut(s) 100, 516
HinfI GANTC 4 cut(s) 94, 674, 737, 884
HpaII CCGG 2 cut(s) 842, 899
HphI GGTGA 2 cut(s) 523, 831
Hpy166II GTNNAC 3 cut(s) 93, 289, 850
Hpy188I TCNGA 6 cut(s) 84, 543, 565, 730, 771, 883
Hpy188III TCNNGA 2 cut(s) 498, 734
Hpy8I GTNNAC 3 cut(s) 93, 289, 850
HpyAV CCTTC 4 cut(s) 383, 495, 615, 935
HpyCH4III ACNGT 2 cut(s) 55, 655
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 6 cut(s) 31, 134, 595, 718, 1010, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 601, 623, 899
HpyF3I CTNAG 4 cut(s) 19, 297, 412, 468
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 3 cut(s) 31, 226, 347
HspAI GCGC 1 cut(s) 1035
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 2 cut(s) 247, 730
LmnI GCTCC 4 cut(s) 178, 451, 485, 1052
Lsp1109I GCAGC 4 cut(s) 97, 604, 635, 730
LweI GCATC 4 cut(s) 207, 470, 734, 837
MaeI CTAG 5 cut(s) 204, 237, 390, 498, 825
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 3 cut(s) 322, 685, 775
MalI GATC 2 cut(s) 249, 732
MboI GATC 2 cut(s) 247, 730
MboII GAAGA 5 cut(s) 184, 296, 299, 578, 870
MhlI GDGCHC 1 cut(s) 411
MlyI GAGTC 4 cut(s) 88, 683, 731, 878
MmeI TCCRAC 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 669, 987
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 842, 899
MspR9I CCNGG 3 cut(s) 161, 762, 934
MvaI CCWGG 3 cut(s) 161, 762, 934
MvnI CGCG 1 cut(s) 1035
MwoI GCNNNNNNNGC 4 cut(s) 452, 601, 623, 899
NdeII GATC 2 cut(s) 247, 730
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 3 cut(s) 31, 226, 347
NlaIV GGNNCC 5 cut(s) 158, 418, 438, 897, 921
NmuCI GTSAC 2 cut(s) 322, 685
NspI RCATGY 2 cut(s) 31, 347
NspV TTCGAA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 414
PciI ACATGT 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 841
PkrI GCNGC 5 cut(s) 112, 619, 622, 625, 720
PleI GAGTC 4 cut(s) 88, 682, 731, 878
PpsI GAGTC 4 cut(s) 88, 682, 731, 878
PpuMI RGGWCCY 2 cut(s) 157, 919
PscI ACATGT 1 cut(s) 343
Psp5II RGGWCCY 2 cut(s) 157, 919
Psp6I CCWGG 3 cut(s) 159, 760, 932
PspEI GGTNACC 1 cut(s) 775
PspGI CCWGG 3 cut(s) 159, 760, 932
PspN4I GGNNCC 5 cut(s) 158, 418, 438, 897, 921
PspPI GGNCC 2 cut(s) 157, 919
PspPPI RGGWCCY 2 cut(s) 157, 919
PstNI CAGNNNCTG 2 cut(s) 316, 563
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 414
SalI GTCGAC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 669, 987
SatI GCNGC 5 cut(s) 111, 618, 621, 624, 719
Sau3AI GATC 2 cut(s) 247, 730
Sau96I GGNCC 2 cut(s) 157, 919
SchI GAGTC 4 cut(s) 88, 683, 731, 878
ScrFI CCNGG 3 cut(s) 161, 762, 934
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 4 cut(s) 207, 470, 734, 837
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 195
SgrAI CRCCGGYG 1 cut(s) 841
SinI GGWCC 2 cut(s) 157, 919
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SsiI CCGC 3 cut(s) 434, 620, 893
SspMI CTAG 5 cut(s) 204, 237, 390, 498, 825
StyD4I CCNGG 3 cut(s) 159, 760, 932
TaaI ACNGT 2 cut(s) 55, 655
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 195, 288
TaqII GACCGA 1 cut(s) 240
TauI GCSGC 1 cut(s) 623
Tru1I TTAA 2 cut(s) 669, 987
Tru9I TTAA 2 cut(s) 669, 987
TscAI CASTG 2 cut(s) 457, 865
TseFI GTSAC 2 cut(s) 322, 685
TseI GCWGC 4 cut(s) 110, 617, 623, 718
Tsp45I GTSAC 2 cut(s) 322, 685
TspDTI ATGAA 2 cut(s) 239, 381
TspRI CASTG 2 cut(s) 457, 865
VpaK11BI GGWCC 2 cut(s) 157, 919
XapI RAATTY 2 cut(s) 787, 947
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 2 cut(s) 31, 347
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 5 cut(s) 204, 237, 390, 498, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.