gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g22952 |
| malus_domestica | MD03G1249400.v1.1 MD12G1162500.v1.1 |
| prunus_persica | Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1 |
| pyrus_communis | pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040 |
| rosa_roxburghii | Rroxscaffold_4G00320150 Rroxscaffold_7G00185690 |
| rosa_wichuraiana | Rw5G007100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 174 |
| AgsI | TTSAA | 3 cut(s) | 58, 134, 196 |
| ApeKI | GCWGC | 1 cut(s) | 100 |
| AspLEI | GCGC | 1 cut(s) | 169 |
| BbsI | GAAGAC | 1 cut(s) | 141 |
| BbvI | GCAGC | 1 cut(s) | 87 |
| BceAI | ACGGC | 1 cut(s) | 95 |
| BfaI | CTAG | 1 cut(s) | 256 |
| BfoI | RGCGCY | 1 cut(s) | 170 |
| BisI | GCNGC | 1 cut(s) | 101 |
| BlsI | GCNGC | 1 cut(s) | 102 |
| BmiI | GGNNCC | 1 cut(s) | 150 |
| BmsI | GCATC | 1 cut(s) | 242 |
| BpiI | GAAGAC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 159 |
| BsaJI | CCNNGG | 1 cut(s) | 111 |
| Bse3DI | GCAATG | 1 cut(s) | 28 |
| BseDI | CCNNGG | 1 cut(s) | 111 |
| BseMI | GCAATG | 1 cut(s) | 28 |
| BseRI | GAGGAG | 1 cut(s) | 161 |
| BseXI | GCAGC | 1 cut(s) | 87 |
| BspLI | GGNNCC | 1 cut(s) | 150 |
| BsrDI | GCAATG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 111 |
| Bst4CI | ACNGT | 2 cut(s) | 140, 246 |
| BstDSI | CCRYGG | 1 cut(s) | 111 |
| BstH2I | RGCGCY | 1 cut(s) | 170 |
| BstHHI | GCGC | 1 cut(s) | 169 |
| BstV1I | GCAGC | 1 cut(s) | 87 |
| BstV2I | GAAGAC | 1 cut(s) | 141 |
| BtgI | CCRYGG | 1 cut(s) | 111 |
| CfoI | GCGC | 1 cut(s) | 169 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 93, 128 |
| CviJI | RGCY | 2 cut(s) | 110, 151 |
| CviKI_1 | RGCY | 2 cut(s) | 110, 151 |
| Eco57I | CTGAAG | 1 cut(s) | 174 |
| EcoT22I | ATGCAT | 1 cut(s) | 193 |
| FaiI | YATR | 3 cut(s) | 92, 128, 144 |
| Fnu4HI | GCNGC | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 101 |
| FspBI | CTAG | 1 cut(s) | 256 |
| GlaI | GCGC | 1 cut(s) | 168 |
| GluI | GCNGC | 1 cut(s) | 101 |
| HaeII | RGCGCY | 1 cut(s) | 170 |
| HhaI | GCGC | 1 cut(s) | 169 |
| Hin6I | GCGC | 1 cut(s) | 167 |
| HinP1I | GCGC | 1 cut(s) | 167 |
| HinfI | GANTC | 1 cut(s) | 54 |
| HpyAV | CCTTC | 2 cut(s) | 88, 190 |
| HpyCH4III | ACNGT | 2 cut(s) | 140, 246 |
| HpyCH4V | TGCA | 2 cut(s) | 11, 191 |
| HspAI | GCGC | 1 cut(s) | 167 |
| LmnI | GCTCC | 2 cut(s) | 81, 148 |
| LpnPI | CCDG | 2 cut(s) | 149, 165 |
| Lsp1109I | GCAGC | 1 cut(s) | 87 |
| LweI | GCATC | 1 cut(s) | 242 |
| MaeI | CTAG | 1 cut(s) | 256 |
| MboII | GAAGA | 2 cut(s) | 146, 167 |
| MluCI | AATT | 2 cut(s) | 31, 67 |
| MnlI | CCTC | 2 cut(s) | 60, 139 |
| Mph1103I | ATGCAT | 1 cut(s) | 193 |
| NlaIV | GGNNCC | 1 cut(s) | 150 |
| NsiI | ATGCAT | 1 cut(s) | 193 |
| PfeI | GAWTC | 1 cut(s) | 54 |
| PkrI | GCNGC | 1 cut(s) | 102 |
| PspN4I | GGNNCC | 1 cut(s) | 150 |
| SatI | GCNGC | 1 cut(s) | 101 |
| SetI | ASST | 1 cut(s) | 99 |
| SfaNI | GCATC | 1 cut(s) | 242 |
| SgeI | CNNG | 7 cut(s) | 30, 63, 124, 164, 176, 188, 232 |
| SmlI | CTYRAG | 1 cut(s) | 174 |
| SmoI | CTYRAG | 1 cut(s) | 174 |
| Sse9I | AATT | 2 cut(s) | 31, 67 |
| SspMI | CTAG | 1 cut(s) | 256 |
| TaaI | ACNGT | 2 cut(s) | 140, 246 |
| TaqI | TCGA | 2 cut(s) | 52, 205 |
| TasI | AATT | 2 cut(s) | 31, 67 |
| TfiI | GAWTC | 1 cut(s) | 54 |
| TseI | GCWGC | 1 cut(s) | 100 |
| TspDTI | ATGAA | 2 cut(s) | 107, 174 |
| XspI | CTAG | 1 cut(s) | 256 |
| Zsp2I | ATGCAT | 1 cut(s) | 193 |