pycom15g18800

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017469
Physical Location & Seq
Reverse (-)
13324919 .. 13325491
573 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18800.1

Sequence Viewer

Length: 573 bp
ATGTGTGAAGGAGGTCATAGCCTCTGTAATTCTCTCTGCAATTCTCTTCCATTTCCAGCTTCTTTCTTCTTCATTGCATTCATCATTTCTAATCATTCTGTGTGTCTAACTCTCTGTAAAACTTCACTCTCAAGTTCAAATACATTAACATGGCATCAGAGCCAGGTTGCATTTCTGGGCGTTAGAATCTGTGAAATCAGAATTAGAGCTTTTTCTTGCTTTGACGAGCCCCGACCTCTCGAGATTCAAATCTTACATGGCTGGTCTGGTGGTAGAGAGCTACAAGCTCTGATTTTCAATGGCAACAACTTCGACTTCTGGCAAATCAGAATGAAGACCATTTTCCGATCCCATGAGCTGTGGAGTCTGGTTGAGAAGGGCTTTGCTCCTCCAGCAAAGCAGGTAGAGGTCACAGAAGCTGAGAGTAAGCTCTTGCGAGAGAATATGATGAAGGATGCTAGAGCACTTGGCATCACTCAAGGTGCCGTTTCAGATCAAATATTCTCGACAATCGCTACGCAGGACACTGCAAAGGCAGCTTGGGGTATTTTGAAAGCAAGAATTTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 Retrotran_gag_2 gag_pre-integrs zf-CCHC

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

8.15

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017469)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22952
malus_domestica MD03G1249400.v1.1 MD12G1162500.v1.1
prunus_persica Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1
pyrus_communis pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040
rosa_roxburghii Rroxscaffold_4G00320150 Rroxscaffold_7G00185690
rosa_wichuraiana Rw5G007100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 482
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 561
AgsI TTSAA 4 cut(s) 138, 248, 298, 553
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 8 cut(s) 59, 209, 280, 287, 358, 419, 430, 539
AluI AGCT 8 cut(s) 59, 209, 280, 287, 358, 419, 430, 539
Alw21I GWGCWC 1 cut(s) 466
AlwI GGATC 1 cut(s) 342
AlwNI CAGNNNCTG 1 cut(s) 419
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 548
BceAI ACGGC 1 cut(s) 470
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 1 cut(s) 164
BfaI CTAG 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 163, 445, 480
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 115, 462
BsaBI GATNNNNATC 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 248
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 239
BsmI GAATGC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 231, 466
Bsp143I GATC 2 cut(s) 347, 493
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 2 cut(s) 347, 493
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 460
BstKTI GATC 2 cut(s) 350, 496
BstMBI GATC 2 cut(s) 347, 493
BstMWI GCNNNNNNNGC 2 cut(s) 392, 536
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 1 cut(s) 525
BveI ACCTGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 419
CviAII CATG 3 cut(s) 150, 257, 353
DdeI CTNAG 1 cut(s) 420
DpnI GATC 2 cut(s) 349, 495
DpnII GATC 2 cut(s) 347, 493
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 3 cut(s) 153, 260, 356
FaiI YATR 5 cut(s) 18, 151, 258, 354, 446
FatI CATG 3 cut(s) 149, 256, 352
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 1 cut(s) 459
GluI GCNGC 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 375
Hin1II CATG 3 cut(s) 153, 260, 356
HinfI GANTC 3 cut(s) 186, 244, 364
Hpy188I TCNGA 6 cut(s) 159, 200, 291, 329, 347, 493
Hpy188III TCNNGA 3 cut(s) 239, 241, 505
HpyAV CCTTC 2 cut(s) 370, 445
HpyCH4V TGCA 4 cut(s) 39, 77, 170, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 536
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 3 cut(s) 153, 260, 356
Kzo9I GATC 2 cut(s) 347, 493
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 3 cut(s) 163, 445, 480
MaeI CTAG 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 349, 495
MboI GATC 2 cut(s) 347, 493
MboII GAAGA 4 cut(s) 38, 58, 61, 346
MhlI GDGCHC 2 cut(s) 231, 466
MluCI AATT 4 cut(s) 28, 40, 201, 561
MlyI GAGTC 1 cut(s) 373
MnlI CCTC 5 cut(s) 5, 32, 246, 399, 400
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 392, 536
NdeII GATC 2 cut(s) 347, 493
NlaIII CATG 3 cut(s) 153, 260, 356
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 409
PaeR7I CTCGAG 1 cut(s) 239
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 186, 244
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 2 cut(s) 347, 493
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 2 cut(s) 231, 466
SfaNI GCATC 3 cut(s) 163, 445, 480
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 148
SmlI CTYRAG 3 cut(s) 130, 239, 477
SmoI CTYRAG 3 cut(s) 130, 239, 477
Sse9I AATT 4 cut(s) 28, 40, 201, 561
SspI AATATT 1 cut(s) 501
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 162
TaqI TCGA 3 cut(s) 240, 312, 506
TasI AATT 4 cut(s) 28, 40, 201, 561
TfiI GAWTC 2 cut(s) 186, 244
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 4 cut(s) 61, 70, 347, 464
TspRI CASTG 1 cut(s) 532
XapI RAATTY 1 cut(s) 561
XhoI CTCGAG 1 cut(s) 239
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.