gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g22952 |
| malus_domestica | MD03G1249400.v1.1 MD12G1162500.v1.1 |
| prunus_persica | Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1 |
| pyrus_communis | pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040 |
| rosa_roxburghii | Rroxscaffold_4G00320150 Rroxscaffold_7G00185690 |
| rosa_wichuraiana | Rw5G007100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 18 |
| AclWI | GGATC | 2 cut(s) | 10, 23 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 49 |
| AgsI | TTSAA | 1 cut(s) | 196 |
| AluBI | AGCT | 1 cut(s) | 199 |
| AluI | AGCT | 1 cut(s) | 199 |
| Alw26I | GTCTC | 1 cut(s) | 119 |
| AlwI | GGATC | 2 cut(s) | 10, 23 |
| Aor13HI | TCCGGA | 1 cut(s) | 18 |
| ApeKI | GCWGC | 1 cut(s) | 31 |
| BamHI | GGATCC | 1 cut(s) | 15 |
| BbvI | GCAGC | 1 cut(s) | 43 |
| BccI | CCATC | 2 cut(s) | 47, 47 |
| BceAI | ACGGC | 1 cut(s) | 19 |
| BcoDI | GTCTC | 1 cut(s) | 119 |
| BglII | AGATCT | 1 cut(s) | 204 |
| BisI | GCNGC | 1 cut(s) | 32 |
| BlsI | GCNGC | 1 cut(s) | 33 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BsaWI | WCCGGW | 1 cut(s) | 18 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseAI | TCCGGA | 1 cut(s) | 18 |
| BseGI | GGATG | 2 cut(s) | 39, 58 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 43 |
| BsgI | GTGCAG | 1 cut(s) | 50 |
| BsiSI | CCGG | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BsmAI | GTCTC | 1 cut(s) | 119 |
| Bsp13I | TCCGGA | 1 cut(s) | 18 |
| Bsp143I | GATC | 2 cut(s) | 15, 204 |
| BspEI | TCCGGA | 1 cut(s) | 18 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspPI | GGATC | 2 cut(s) | 10, 23 |
| BssMI | GATC | 2 cut(s) | 15, 204 |
| BstC8I | GCNNGC | 1 cut(s) | 77 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstF5I | GGATG | 2 cut(s) | 39, 58 |
| BstKTI | GATC | 2 cut(s) | 18, 207 |
| BstMAI | GTCTC | 1 cut(s) | 119 |
| BstMBI | GATC | 2 cut(s) | 15, 204 |
| BstNSI | RCATGY | 1 cut(s) | 79 |
| BstV1I | GCAGC | 1 cut(s) | 43 |
| BstX2I | RGATCY | 2 cut(s) | 15, 204 |
| BstYI | RGATCY | 2 cut(s) | 15, 204 |
| BtsCI | GGATG | 2 cut(s) | 39, 58 |
| Cac8I | GCNNGC | 1 cut(s) | 77 |
| CviAII | CATG | 1 cut(s) | 76 |
| CviJI | RGCY | 3 cut(s) | 34, 142, 199 |
| CviKI_1 | RGCY | 3 cut(s) | 34, 142, 199 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DpnI | GATC | 2 cut(s) | 17, 206 |
| DpnII | GATC | 2 cut(s) | 15, 204 |
| FaeI | CATG | 1 cut(s) | 79 |
| FaiI | YATR | 3 cut(s) | 63, 77, 135 |
| FatI | CATG | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 1 cut(s) | 32 |
| FokI | GGATG | 2 cut(s) | 26, 65 |
| Fsp4HI | GCNGC | 1 cut(s) | 32 |
| GluI | GCNGC | 1 cut(s) | 32 |
| HapII | CCGG | 1 cut(s) | 19 |
| Hin1II | CATG | 1 cut(s) | 79 |
| HpaII | CCGG | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 1 cut(s) | 209 |
| Hpy188III | TCNNGA | 1 cut(s) | 19 |
| HpyAV | CCTTC | 1 cut(s) | 5 |
| HpyCH4V | TGCA | 1 cut(s) | 31 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| Hsp92II | CATG | 1 cut(s) | 79 |
| Kpn2I | TCCGGA | 1 cut(s) | 18 |
| Kzo9I | GATC | 2 cut(s) | 15, 204 |
| LmnI | GCTCC | 2 cut(s) | 72, 157 |
| LpnPI | CCDG | 3 cut(s) | 32, 156, 163 |
| Lsp1109I | GCAGC | 1 cut(s) | 43 |
| MaeIII | GTNAC | 1 cut(s) | 56 |
| MalI | GATC | 2 cut(s) | 17, 206 |
| MboI | GATC | 2 cut(s) | 15, 204 |
| MflI | RGATCY | 2 cut(s) | 15, 204 |
| MluCI | AATT | 1 cut(s) | 191 |
| MnlI | CCTC | 2 cut(s) | 54, 181 |
| MroI | TCCGGA | 1 cut(s) | 18 |
| MslI | CAYNNNNRTG | 1 cut(s) | 80 |
| MspI | CCGG | 1 cut(s) | 19 |
| NdeII | GATC | 2 cut(s) | 15, 204 |
| NlaIII | CATG | 1 cut(s) | 79 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NmuCI | GTSAC | 1 cut(s) | 56 |
| NspI | RCATGY | 1 cut(s) | 79 |
| PaeI | GCATGC | 1 cut(s) | 79 |
| PkrI | GCNGC | 1 cut(s) | 33 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PsuI | RGATCY | 2 cut(s) | 15, 204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 80 |
| SatI | GCNGC | 1 cut(s) | 32 |
| Sau3AI | GATC | 2 cut(s) | 15, 204 |
| SetI | ASST | 1 cut(s) | 201 |
| SgeI | CNNG | 6 cut(s) | 31, 57, 61, 88, 155, 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 80 |
| SphI | GCATGC | 1 cut(s) | 79 |
| Sse9I | AATT | 1 cut(s) | 191 |
| SspI | AATATT | 1 cut(s) | 110 |
| TasI | AATT | 1 cut(s) | 191 |
| TseFI | GTSAC | 1 cut(s) | 56 |
| TseI | GCWGC | 1 cut(s) | 31 |
| Tsp45I | GTSAC | 1 cut(s) | 56 |
| XceI | RCATGY | 1 cut(s) | 79 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 46 |