gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g22952 |
| malus_domestica | MD03G1249400.v1.1 MD12G1162500.v1.1 |
| prunus_persica | Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1 |
| pyrus_communis | pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040 |
| rosa_roxburghii | Rroxscaffold_4G00320150 Rroxscaffold_7G00185690 |
| rosa_wichuraiana | Rw5G007100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 124 |
| AcoI | YGGCCR | 2 cut(s) | 115, 147 |
| AcsI | RAATTY | 2 cut(s) | 11, 197 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 124 |
| AgsI | TTSAA | 1 cut(s) | 38 |
| AluBI | AGCT | 1 cut(s) | 76 |
| AluI | AGCT | 1 cut(s) | 76 |
| AoxI | GGCC | 2 cut(s) | 115, 147 |
| ApoI | RAATTY | 2 cut(s) | 11, 197 |
| BalI | TGGCCA | 2 cut(s) | 117, 149 |
| BbsI | GAAGAC | 1 cut(s) | 80 |
| BglII | AGATCT | 2 cut(s) | 49, 159 |
| BmsI | GCATC | 1 cut(s) | 50 |
| BpiI | GAAGAC | 1 cut(s) | 80 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 124 |
| Bse3DI | GCAATG | 1 cut(s) | 129 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BseMI | GCAATG | 1 cut(s) | 129 |
| BshFI | GGCC | 2 cut(s) | 117, 149 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BsnI | GGCC | 2 cut(s) | 117, 149 |
| Bsp143I | GATC | 2 cut(s) | 49, 159 |
| BspANI | GGCC | 2 cut(s) | 117, 149 |
| BsrDI | GCAATG | 1 cut(s) | 129 |
| BssMI | GATC | 2 cut(s) | 49, 159 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstKTI | GATC | 2 cut(s) | 52, 162 |
| BstMBI | GATC | 2 cut(s) | 49, 159 |
| BstV2I | GAAGAC | 1 cut(s) | 80 |
| BstX2I | RGATCY | 2 cut(s) | 49, 159 |
| BstYI | RGATCY | 2 cut(s) | 49, 159 |
| BsuRI | GGCC | 2 cut(s) | 117, 149 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CviAII | CATG | 4 cut(s) | 98, 119, 138, 151 |
| CviJI | RGCY | 3 cut(s) | 76, 117, 149 |
| CviKI_1 | RGCY | 3 cut(s) | 76, 117, 149 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DpnI | GATC | 2 cut(s) | 51, 161 |
| DpnII | GATC | 2 cut(s) | 49, 159 |
| EaeI | YGGCCR | 2 cut(s) | 115, 147 |
| FaeI | CATG | 4 cut(s) | 101, 122, 141, 154 |
| FaiI | YATR | 8 cut(s) | 21, 99, 120, 139, 152, 172, 177, 179 |
| FatI | CATG | 4 cut(s) | 97, 118, 137, 150 |
| FauNDI | CATATG | 1 cut(s) | 177 |
| FokI | GGATG | 1 cut(s) | 121 |
| HaeIII | GGCC | 2 cut(s) | 117, 149 |
| Hin1II | CATG | 4 cut(s) | 101, 122, 141, 154 |
| Hpy188III | TCNNGA | 1 cut(s) | 53 |
| HpyAV | CCTTC | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 3 cut(s) | 122, 154, 203 |
| Hsp92II | CATG | 4 cut(s) | 101, 122, 141, 154 |
| Kzo9I | GATC | 2 cut(s) | 49, 159 |
| LpnPI | CCDG | 1 cut(s) | 77 |
| LweI | GCATC | 1 cut(s) | 50 |
| MalI | GATC | 2 cut(s) | 51, 161 |
| MboI | GATC | 2 cut(s) | 49, 159 |
| MboII | GAAGA | 2 cut(s) | 80, 140 |
| MflI | RGATCY | 2 cut(s) | 49, 159 |
| MlsI | TGGCCA | 2 cut(s) | 117, 149 |
| MluCI | AATT | 3 cut(s) | 11, 192, 197 |
| MluNI | TGGCCA | 2 cut(s) | 117, 149 |
| Mox20I | TGGCCA | 2 cut(s) | 117, 149 |
| MscI | TGGCCA | 2 cut(s) | 117, 149 |
| MseI | TTAA | 2 cut(s) | 191, 195 |
| Msp20I | TGGCCA | 2 cut(s) | 117, 149 |
| NdeI | CATATG | 1 cut(s) | 177 |
| NdeII | GATC | 2 cut(s) | 49, 159 |
| NlaIII | CATG | 4 cut(s) | 101, 122, 141, 154 |
| PacI | TTAATTAA | 1 cut(s) | 195 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 124 |
| PsuI | RGATCY | 2 cut(s) | 49, 159 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| SaqAI | TTAA | 2 cut(s) | 191, 195 |
| Sau3AI | GATC | 2 cut(s) | 49, 159 |
| SetI | ASST | 2 cut(s) | 78, 147 |
| SfaNI | GCATC | 1 cut(s) | 50 |
| SgeI | CNNG | 8 cut(s) | 65, 104, 110, 131, 146, 150, 163, 175 |
| Sse9I | AATT | 3 cut(s) | 11, 192, 197 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 3 cut(s) | 11, 192, 197 |
| Tru1I | TTAA | 2 cut(s) | 191, 195 |
| Tru9I | TTAA | 2 cut(s) | 191, 195 |
| TspDTI | ATGAA | 3 cut(s) | 114, 125, 159 |
| TspGWI | ACGGA | 1 cut(s) | 121 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 124 |
| XapI | RAATTY | 2 cut(s) | 11, 197 |