Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0017469

Physical Location & Seq

Genomic Coordinates Reverse (-)

14112925 .. 14113369

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGCGACGAAAGACCAACTGAGACGATACCCCATGTATCTGATCCTCTCATTCTGCATCATTCAGACTCACCAAGTCTTGTCTTAGTCTCACAACATCTTGATGGACACAACTATGGACAGTGGAGCCGTTCTATGCGAATCGCCCTTAGCGCCAAAAACAAACTAGGGTTCATTGATGGATCAATCAAGAATCCCGCAACCACTGATGCCAAGGCAACATTGCCCACAGTATACTCTACTGCAAAACTGCATCAGCAGCATGGAGAGATCTTGAGGATCGTTTCTTGCAAGGAAACGATTCCAGGATCTATCAAATTCGACAAGAAATTGCTGAACACCGACAAGGACAACTATTTGTTTCAGATTATTACACAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

128

Amino Acids

14.15

Weight (kDa)

7.93

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017469)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22952
malus_domestica	MD03G1249400.v1.1 MD12G1162500.v1.1
prunus_persica	Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1
pyrus_communis	pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040
rosa_roxburghii	Rroxscaffold_4G00320150 Rroxscaffold_7G00185690
rosa_wichuraiana	Rw5G007100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	4 cut(s)	38, 190, 287, 316
AcsI	RAATTY	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	17, 94
AlwI	GGATC	4 cut(s)	38, 190, 287, 316
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	2 cut(s)	98, 173
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	17, 94
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	156
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	67, 199, 262
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	17, 94
BsmBI	CGTCTC	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	43, 182, 270, 279, 308
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	38, 190, 287, 316
BsrDI	GCAATG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	43, 182, 270, 279, 308
BssNAI	GTATAC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	123, 232
BstDEI	CTNAG	3 cut(s)	21, 85, 149
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	5 cut(s)	46, 185, 273, 282, 311
BstMAI	GTCTC	2 cut(s)	17, 94
BstMBI	GATC	5 cut(s)	43, 182, 270, 279, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 259
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	270, 308
BstYI	RGATCY	2 cut(s)	270, 308
BstZ17I	GTATAC	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	128, 204
CfoI	GCGC	1 cut(s)	155
CviAII	CATG	2 cut(s)	35, 263
CviJI	RGCY	1 cut(s)	129
CviKI_1	RGCY	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	21, 85, 149
DpnI	GATC	5 cut(s)	45, 184, 272, 281, 310
DpnII	GATC	5 cut(s)	43, 182, 270, 279, 308
Eco130I	CCWWGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	2 cut(s)	38, 266
FaiI	YATR	5 cut(s)	36, 117, 137, 235, 264
FatI	CATG	2 cut(s)	34, 262
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	156
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	38, 266
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	4 cut(s)	68, 141, 193, 301
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	43, 67, 366
Hpy188III	TCNNGA	3 cut(s)	101, 190, 274
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	11
HpyCH4III	ACNGT	2 cut(s)	123, 232
HpyCH4V	TGCA	4 cut(s)	58, 245, 253, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 259
HpyF3I	CTNAG	3 cut(s)	21, 85, 149
Hsp92II	CATG	2 cut(s)	38, 266
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	5 cut(s)	43, 182, 270, 279, 308
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	2 cut(s)	291, 318
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	67, 199, 262
MaeI	CTAG	1 cut(s)	167
MalI	GATC	5 cut(s)	45, 184, 272, 281, 310
MboI	GATC	5 cut(s)	43, 182, 270, 279, 308
MflI	RGATCY	2 cut(s)	270, 308
MluCI	AATT	3 cut(s)	317, 329, 379
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	2 cut(s)	57, 270
MroXI	GAANNNNTTC	1 cut(s)	300
MslI	CAYNNNNRTG	2 cut(s)	102, 114
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	152, 259
NdeII	GATC	5 cut(s)	43, 182, 270, 279, 308
NlaIII	CATG	2 cut(s)	38, 266
NlaIV	GGNNCC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	141, 193, 301
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	270, 308
RseI	CAYNNNNRTG	2 cut(s)	102, 114
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	5 cut(s)	43, 182, 270, 279, 308
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	306
SfaNI	GCATC	3 cut(s)	67, 199, 262
SmiMI	CAYNNNNRTG	2 cut(s)	102, 114
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	3 cut(s)	317, 329, 379
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	123, 232
TaqI	TCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	317, 329, 379
TfiI	GAWTC	3 cut(s)	141, 193, 301
TscAI	CASTG	2 cut(s)	128, 211
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	128, 211
XapI	RAATTY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.