gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g22952 |
| malus_domestica | MD03G1249400.v1.1 MD12G1162500.v1.1 |
| prunus_persica | Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1 |
| pyrus_communis | pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040 |
| rosa_roxburghii | Rroxscaffold_4G00320150 Rroxscaffold_7G00185690 |
| rosa_wichuraiana | Rw5G007100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AluBI | AGCT | 1 cut(s) | 42 |
| AluI | AGCT | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 135 |
| BccI | CCATC | 1 cut(s) | 44 |
| BmsI | GCATC | 3 cut(s) | 7, 29, 88 |
| BseMII | CTCAG | 1 cut(s) | 38 |
| BseRI | GAGGAG | 1 cut(s) | 136 |
| BseSI | GKGCMC | 1 cut(s) | 135 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| Bst6I | CTCTTC | 1 cut(s) | 84 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 82 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstDEI | CTNAG | 1 cut(s) | 24 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 82 |
| BstSLI | GKGCMC | 1 cut(s) | 135 |
| BtsI | GCAGTG | 1 cut(s) | 101 |
| BtsIMutI | CAGTG | 1 cut(s) | 101 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CviAII | CATG | 1 cut(s) | 82 |
| CviJI | RGCY | 3 cut(s) | 42, 53, 80 |
| CviKI_1 | RGCY | 3 cut(s) | 42, 53, 80 |
| DdeI | CTNAG | 1 cut(s) | 24 |
| Eam1104I | CTCTTC | 1 cut(s) | 84 |
| EarI | CTCTTC | 1 cut(s) | 84 |
| EcoT22I | ATGCAT | 1 cut(s) | 22 |
| FaeI | CATG | 1 cut(s) | 85 |
| FaiI | YATR | 4 cut(s) | 45, 62, 83, 151 |
| FatI | CATG | 1 cut(s) | 81 |
| Hin1II | CATG | 1 cut(s) | 85 |
| HinfI | GANTC | 1 cut(s) | 124 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 20, 85, 101, 106 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 82 |
| HpyF3I | CTNAG | 1 cut(s) | 24 |
| Hsp92II | CATG | 1 cut(s) | 85 |
| LpnPI | CCDG | 2 cut(s) | 68, 71 |
| LweI | GCATC | 3 cut(s) | 7, 29, 88 |
| MboII | GAAGA | 1 cut(s) | 101 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MluCI | AATT | 1 cut(s) | 138 |
| MlyI | GAGTC | 1 cut(s) | 118 |
| Mph1103I | ATGCAT | 1 cut(s) | 22 |
| MseI | TTAA | 1 cut(s) | 137 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 82 |
| NlaIII | CATG | 1 cut(s) | 85 |
| NsiI | ATGCAT | 1 cut(s) | 22 |
| PleI | GAGTC | 1 cut(s) | 118 |
| PpsI | GAGTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 1 cut(s) | 137 |
| SchI | GAGTC | 1 cut(s) | 118 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SetI | ASST | 2 cut(s) | 44, 146 |
| SfaNI | GCATC | 3 cut(s) | 7, 29, 88 |
| SgeI | CNNG | 6 cut(s) | 67, 89, 94, 98, 132, 140 |
| Sse9I | AATT | 1 cut(s) | 138 |
| TasI | AATT | 1 cut(s) | 138 |
| Tru1I | TTAA | 1 cut(s) | 137 |
| Tru9I | TTAA | 1 cut(s) | 137 |
| TscAI | CASTG | 1 cut(s) | 108 |
| TspRI | CASTG | 1 cut(s) | 108 |
| Zsp2I | ATGCAT | 1 cut(s) | 22 |