pycom420g01040

fructose-bisphosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0017469
Physical Location & Seq
Reverse (-)
1524115 .. 1524481
367 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g01040.1

Sequence Viewer

Length: 225 bp
ATGAATAATACATGGATAATTGATTATGGTGCTACTGAACATATGATTTGTGATTCTAGACAGGTACAAACTCTAAAACCATTTACCAAAATTGTCGTGACTATTGCCAATGGCAATGTTGCCTTTGTTATTAGGGAAGGTTTCAAACTGAAAAGACGATTGATGATGGTATTTAAAAGGGGAAGCTTTACTACTTGGAGTTGTCTAACAGTACCTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004332 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016052 GO:0016053 GO:0016310 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0018130 GO:0019318 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Glycolytic

Protein Analysis

75

Amino Acids

8.57

Weight (kDa)

10.05

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 5 - 45 7.1e-06 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017469)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22952
malus_domestica MD03G1249400.v1.1 MD12G1162500.v1.1
prunus_persica Prupe.3G159700_v2.0.a1 Prupe.8G004800_v2.0.a1
pyrus_communis pycom01g01870 pycom01g13710 pycom15g18800 pycom420g01040
rosa_roxburghii Rroxscaffold_4G00320150 Rroxscaffold_7G00185690
rosa_wichuraiana Rw5G007100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 66, 213
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BccI CCATC 1 cut(s) 160
BfaI CTAG 2 cut(s) 57, 216
Bse3DI GCAATG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 211
Csp6I GTAC 2 cut(s) 65, 212
CviAII CATG 1 cut(s) 12
CviJI RGCY 1 cut(s) 186
CviKI_1 RGCY 1 cut(s) 186
CviQI GTAC 2 cut(s) 65, 212
DraI TTTAAA 1 cut(s) 175
FaeI CATG 1 cut(s) 15
FaiI YATR 4 cut(s) 13, 27, 42, 44
FatI CATG 1 cut(s) 11
FauNDI CATATG 1 cut(s) 42
FspBI CTAG 2 cut(s) 57, 216
Hin1II CATG 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 57, 97
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 211
Hsp92II CATG 1 cut(s) 15
LpnPI CCDG 1 cut(s) 47
MaeI CTAG 2 cut(s) 57, 216
MaeIII GTNAC 1 cut(s) 97
MluCI AATT 2 cut(s) 18, 90
MseI TTAA 1 cut(s) 174
NdeI CATATG 1 cut(s) 42
NlaIII CATG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 53
RsaI GTAC 2 cut(s) 66, 213
RsaNI GTAC 2 cut(s) 65, 212
SaqAI TTAA 1 cut(s) 174
SetI ASST 4 cut(s) 66, 142, 188, 217
SgeI CNNG 5 cut(s) 24, 69, 74, 109, 207
Sse9I AATT 2 cut(s) 18, 90
SspMI CTAG 2 cut(s) 57, 216
TaaI ACNGT 1 cut(s) 211
TasI AATT 2 cut(s) 18, 90
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 56
XspI CTAG 2 cut(s) 57, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.