The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g40120 |
| malus_domestica | MD09G1135100.v1.1 MD17G1124100.v1.1 |
| prunus_persica | Prupe.3G191600_v2.0.a1 Prupe.3G191600_v2.0.a1 Prupe.3G191600_v2.0.a1 |
| pyrus_communis | pycom09g05620 pycom17g11550 |
| rosa_chinensis | RchiOBHm_Chr2g0154751 |
| rosa_laevigata | RLG00000020800 |
| rosa_multiflora | Rmu_sc0001004.1_g000002 Rmu_sc0001027.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00094130 |
| rosa_rugosa | Rorug02G0444800 |
| rosa_samantha | Rh2AG510400 Rh2BG521300 Rh2CG495600 Rh2DG531400 |
| rosa_wichuraiana | Rw2G041980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1434, 1461 |
| Acc36I | ACCTGC | 2 cut(s) | 1434, 1461 |
| AccB1I | GGYRCC | 1 cut(s) | 677 |
| AccIII | TCCGGA | 1 cut(s) | 623 |
| AclI | AACGTT | 1 cut(s) | 1522 |
| AclWI | GGATC | 1 cut(s) | 1249 |
| AcoI | YGGCCR | 1 cut(s) | 128 |
| AcsI | RAATTY | 4 cut(s) | 256, 286, 319, 1354 |
| AcuI | CTGAAG | 2 cut(s) | 738, 762 |
| AdeI | CACNNNGTG | 1 cut(s) | 479 |
| AfaI | GTAC | 2 cut(s) | 213, 942 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 332, 703, 759 |
| AflIII | ACRYGT | 1 cut(s) | 1417 |
| AgsI | TTSAA | 7 cut(s) | 29, 116, 405, 548, 666, 914, 1197 |
| AjiI | CACGTC | 2 cut(s) | 48, 659 |
| AjnI | CCWGG | 4 cut(s) | 69, 327, 1038, 1652 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 208, 240 |
| Alw21I | GWGCWC | 3 cut(s) | 1138, 1425, 1464 |
| Alw26I | GTCTC | 3 cut(s) | 332, 491, 1178 |
| Alw44I | GTGCAC | 1 cut(s) | 1421 |
| AlwI | GGATC | 1 cut(s) | 1249 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 20, 1014, 1453 |
| Aor13HI | TCCGGA | 1 cut(s) | 623 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApaLI | GTGCAC | 1 cut(s) | 1421 |
| ApoI | RAATTY | 4 cut(s) | 256, 286, 319, 1354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 735 |
| AspS9I | GGNCC | 2 cut(s) | 1127, 1649 |
| AsuHPI | GGTGA | 5 cut(s) | 347, 675, 740, 803, 1216 |
| AvaII | GGWCC | 2 cut(s) | 1127, 1649 |
| BaeGI | GKGCMC | 1 cut(s) | 1425 |
| BanI | GGYRCC | 1 cut(s) | 677 |
| BauI | CACGAG | 1 cut(s) | 1131 |
| BbsI | GAAGAC | 1 cut(s) | 738 |
| Bbv12I | GWGCWC | 3 cut(s) | 1138, 1425, 1464 |
| BccI | CCATC | 9 cut(s) | 326, 371, 448, 610, 1256, 1374, 1419, 1522, 1640 |
| BceAI | ACGGC | 3 cut(s) | 143, 737, 1532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 304, 338 |
| BciT130I | CCWGG | 4 cut(s) | 71, 329, 1040, 1654 |
| BclI | TGATCA | 2 cut(s) | 61, 79 |
| BcoDI | GTCTC | 3 cut(s) | 332, 491, 1178 |
| BfaI | CTAG | 4 cut(s) | 222, 231, 249, 1661 |
| BfmI | CTRYAG | 2 cut(s) | 1436, 1442 |
| BfuAI | ACCTGC | 2 cut(s) | 1434, 1461 |
| BglII | AGATCT | 1 cut(s) | 1633 |
| Bme1390I | CCNGG | 4 cut(s) | 71, 329, 1040, 1654 |
| Bme18I | GGWCC | 2 cut(s) | 1127, 1649 |
| BmgBI | CACGTC | 2 cut(s) | 48, 659 |
| BmgT120I | GGNCC | 2 cut(s) | 1127, 1649 |
| BmiI | GGNNCC | 4 cut(s) | 582, 679, 1128, 1651 |
| BmrFI | CCNGG | 4 cut(s) | 71, 329, 1040, 1654 |
| BmsI | GCATC | 2 cut(s) | 43, 624 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1125 |
| BpiI | GAAGAC | 1 cut(s) | 738 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 665, 697 |
| BpmI | CTGGAG | 3 cut(s) | 539, 1091, 1646 |
| BsaAI | YACGTR | 1 cut(s) | 1680 |
| BsaBI | GATNNNNATC | 4 cut(s) | 574, 1343, 1384, 1599 |
| BsaI | GGTCTC | 1 cut(s) | 1178 |
| BsaJI | CCNNGG | 4 cut(s) | 69, 108, 327, 1652 |
| BsaWI | WCCGGW | 1 cut(s) | 623 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 332, 703, 759 |
| Bse1I | ACTGG | 7 cut(s) | 171, 467, 584, 1028, 1240, 1333, 1629 |
| Bse3DI | GCAATG | 1 cut(s) | 143 |
| Bse8I | GATNNNNATC | 4 cut(s) | 574, 1343, 1384, 1599 |
| BseAI | TCCGGA | 1 cut(s) | 623 |
| BseBI | CCWGG | 4 cut(s) | 71, 329, 1040, 1654 |
| BseDI | CCNNGG | 4 cut(s) | 69, 108, 327, 1652 |
| BseGI | GGATG | 7 cut(s) | 58, 275, 337, 621, 913, 1181, 1651 |
| BseJI | GATNNNNATC | 4 cut(s) | 574, 1343, 1384, 1599 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 332, 703, 759 |
| BseMI | GCAATG | 1 cut(s) | 143 |
| BseMII | CTCAG | 3 cut(s) | 12, 486, 1320 |
| BseNI | ACTGG | 7 cut(s) | 171, 467, 584, 1028, 1240, 1333, 1629 |
| BseRI | GAGGAG | 1 cut(s) | 130 |
| BseSI | GKGCMC | 1 cut(s) | 1425 |
| BseYI | CCCAGC | 1 cut(s) | 697 |
| BsgI | GTGCAG | 3 cut(s) | 524, 832, 873 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BshNI | GGYRCC | 1 cut(s) | 677 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1138, 1425, 1464 |
| BsiSI | CCGG | 1 cut(s) | 624 |
| BslFI | GGGAC | 3 cut(s) | 550, 983, 1635 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 332, 703, 759 |
| BsmAI | GTCTC | 3 cut(s) | 332, 491, 1178 |
| BsmBI | CGTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 3 cut(s) | 550, 983, 1635 |
| BsmI | GAATGC | 1 cut(s) | 694 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bso31I | GGTCTC | 1 cut(s) | 1178 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1138, 1425, 1464 |
| Bsp13I | TCCGGA | 1 cut(s) | 623 |
| Bsp143I | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 3 cut(s) | 13, 487, 1319 |
| BspEI | TCCGGA | 1 cut(s) | 623 |
| BspHI | TCATGA | 1 cut(s) | 76 |
| BspLI | GGNNCC | 4 cut(s) | 582, 679, 1128, 1651 |
| BspMAI | CTGCAG | 1 cut(s) | 1446 |
| BspMI | ACCTGC | 2 cut(s) | 1434, 1461 |
| BspPI | GGATC | 1 cut(s) | 1249 |
| BspT107I | GGYRCC | 1 cut(s) | 677 |
| BspTNI | GGTCTC | 1 cut(s) | 1178 |
| BsrDI | GCAATG | 1 cut(s) | 143 |
| BsrI | ACTGG | 7 cut(s) | 171, 467, 584, 1028, 1240, 1333, 1629 |
| BssECI | CCNNGG | 4 cut(s) | 69, 108, 327, 1652 |
| BssMI | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| BssSI | CACGAG | 1 cut(s) | 1131 |
| BssT1I | CCWWGG | 1 cut(s) | 108 |
| Bst2BI | CACGAG | 1 cut(s) | 1131 |
| Bst2UI | CCWGG | 4 cut(s) | 71, 329, 1040, 1654 |
| Bst4CI | ACNGT | 3 cut(s) | 120, 502, 979 |
| Bst6I | CTCTTC | 1 cut(s) | 1365 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1453 |
| BstBAI | YACGTR | 1 cut(s) | 1680 |
| BstC8I | GCNNGC | 4 cut(s) | 831, 902, 1049, 1053 |
| BstDEI | CTNAG | 5 cut(s) | 21, 264, 495, 1306, 1376 |
| BstF5I | GGATG | 7 cut(s) | 58, 275, 337, 621, 913, 1181, 1651 |
| BstKTI | GATC | 7 cut(s) | 64, 82, 270, 572, 1257, 1597, 1636 |
| BstMAI | GTCTC | 3 cut(s) | 332, 491, 1178 |
| BstMBI | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 698, 1447, 1453, 1474, 1483, 1573 |
| BstNI | CCWGG | 4 cut(s) | 71, 329, 1040, 1654 |
| BstNSI | RCATGY | 2 cut(s) | 1051, 1421 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1125 |
| BstSCI | CCNGG | 4 cut(s) | 69, 327, 1038, 1652 |
| BstSFI | CTRYAG | 2 cut(s) | 1436, 1442 |
| BstSLI | GKGCMC | 1 cut(s) | 1425 |
| BstV2I | GAAGAC | 1 cut(s) | 738 |
| BstX2I | RGATCY | 1 cut(s) | 1633 |
| BstYI | RGATCY | 1 cut(s) | 1633 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BtrI | CACGTC | 2 cut(s) | 48, 659 |
| BtsCI | GGATG | 7 cut(s) | 58, 275, 337, 621, 913, 1181, 1651 |
| BtsI | GCAGTG | 1 cut(s) | 1475 |
| BtsIMutI | CAGTG | 3 cut(s) | 164, 1326, 1475 |
| BveI | ACCTGC | 2 cut(s) | 1434, 1461 |
| Cac8I | GCNNGC | 4 cut(s) | 831, 902, 1049, 1053 |
| CaiI | CAGNNNCTG | 3 cut(s) | 20, 1014, 1453 |
| CciI | TCATGA | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 2 cut(s) | 1127, 1649 |
| Csp6I | GTAC | 2 cut(s) | 212, 941 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1064, 1099 |
| CviAII | CATG | 9 cut(s) | 32, 77, 280, 631, 1048, 1186, 1418, 1430, 1673 |
| CviQI | GTAC | 2 cut(s) | 212, 941 |
| DdeI | CTNAG | 5 cut(s) | 21, 264, 495, 1306, 1376 |
| DpnI | GATC | 7 cut(s) | 63, 81, 269, 571, 1256, 1596, 1635 |
| DpnII | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| DraI | TTTAAA | 1 cut(s) | 1101 |
| DraIII | CACNNNGTG | 1 cut(s) | 479 |
| EaeI | YGGCCR | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 1 cut(s) | 1365 |
| EarI | CTCTTC | 1 cut(s) | 1365 |
| Eco130I | CCWWGG | 1 cut(s) | 108 |
| Eco31I | GGTCTC | 1 cut(s) | 1178 |
| Eco47I | GGWCC | 2 cut(s) | 1127, 1649 |
| Eco57I | CTGAAG | 2 cut(s) | 738, 762 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1127 |
| EcoRII | CCWGG | 4 cut(s) | 69, 327, 1038, 1652 |
| EcoT14I | CCWWGG | 1 cut(s) | 108 |
| ErhI | CCWWGG | 1 cut(s) | 108 |
| Esp3I | CGTCTC | 1 cut(s) | 332 |
| FaeI | CATG | 9 cut(s) | 35, 80, 283, 634, 1051, 1189, 1421, 1433, 1676 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FaqI | GGGAC | 3 cut(s) | 550, 983, 1635 |
| FatI | CATG | 9 cut(s) | 31, 76, 279, 630, 1047, 1185, 1417, 1429, 1672 |
| FauNDI | CATATG | 2 cut(s) | 561, 1220 |
| FbaI | TGATCA | 2 cut(s) | 61, 79 |
| FokI | GGATG | 7 cut(s) | 65, 262, 344, 628, 920, 1168, 1658 |
| FspBI | CTAG | 4 cut(s) | 222, 231, 249, 1661 |
| GsaI | CCCAGC | 1 cut(s) | 701 |
| GsuI | CTGGAG | 3 cut(s) | 539, 1091, 1646 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HapII | CCGG | 1 cut(s) | 624 |
| Hin1II | CATG | 9 cut(s) | 35, 80, 283, 634, 1051, 1189, 1421, 1433, 1676 |
| HindIII | AAGCTT | 1 cut(s) | 304 |
| HinfI | GANTC | 7 cut(s) | 41, 523, 620, 722, 1300, 1535, 1543 |
| HpaII | CCGG | 1 cut(s) | 624 |
| HphI | GGTGA | 5 cut(s) | 347, 675, 740, 803, 1216 |
| Hpy166II | GTNNAC | 2 cut(s) | 943, 1423 |
| Hpy188III | TCNNGA | 8 cut(s) | 77, 123, 518, 567, 624, 740, 1070, 1252 |
| Hpy8I | GTNNAC | 2 cut(s) | 943, 1423 |
| Hpy99I | CGWCG | 2 cut(s) | 52, 1518 |
| HpyAV | CCTTC | 7 cut(s) | 216, 378, 405, 672, 779, 1165, 1246 |
| HpyCH4III | ACNGT | 3 cut(s) | 120, 502, 979 |
| HpyCH4IV | ACGT | 4 cut(s) | 47, 658, 1522, 1679 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 698, 1447, 1453, 1474, 1483, 1573 |
| HpyF3I | CTNAG | 5 cut(s) | 21, 264, 495, 1306, 1376 |
| HpySE526I | ACGT | 4 cut(s) | 47, 658, 1522, 1679 |
| Hsp92II | CATG | 9 cut(s) | 35, 80, 283, 634, 1051, 1189, 1421, 1433, 1676 |
| Kpn2I | TCCGGA | 1 cut(s) | 623 |
| Ksp22I | TGATCA | 2 cut(s) | 61, 79 |
| Kzo9I | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| LmnI | GCTCC | 3 cut(s) | 1072, 1212, 1615 |
| LweI | GCATC | 2 cut(s) | 43, 624 |
| MaeI | CTAG | 4 cut(s) | 222, 231, 249, 1661 |
| MaeII | ACGT | 4 cut(s) | 47, 658, 1522, 1679 |
| MaeIII | GTNAC | 3 cut(s) | 469, 925, 1004 |
| MalI | GATC | 7 cut(s) | 63, 81, 269, 571, 1256, 1596, 1635 |
| MboI | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| MflI | RGATCY | 1 cut(s) | 1633 |
| MhlI | GDGCHC | 3 cut(s) | 1138, 1425, 1464 |
| MluCI | AATT | 8 cut(s) | 256, 286, 319, 543, 642, 957, 1354, 1665 |
| MlyI | GAGTC | 1 cut(s) | 532 |
| MmeI | TCCRAC | 1 cut(s) | 30 |
| MroI | TCCGGA | 1 cut(s) | 623 |
| MroXI | GAANNNNTTC | 1 cut(s) | 735 |
| MseI | TTAA | 8 cut(s) | 420, 552, 594, 608, 801, 873, 1100, 1287 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1416, 1428 |
| MspA1I | CMGCKG | 2 cut(s) | 816, 1441 |
| MspI | CCGG | 1 cut(s) | 624 |
| MspR9I | CCNGG | 4 cut(s) | 71, 329, 1040, 1654 |
| Mva1269I | GAATGC | 1 cut(s) | 694 |
| MvaI | CCWGG | 4 cut(s) | 71, 329, 1040, 1654 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 698, 1447, 1453, 1474, 1483, 1573 |
| NdeI | CATATG | 2 cut(s) | 561, 1220 |
| NdeII | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| NlaIII | CATG | 9 cut(s) | 35, 80, 283, 634, 1051, 1189, 1421, 1433, 1676 |
| NlaIV | GGNNCC | 4 cut(s) | 582, 679, 1128, 1651 |
| NspI | RCATGY | 2 cut(s) | 1051, 1421 |
| PaeI | GCATGC | 1 cut(s) | 1051 |
| PagI | TCATGA | 1 cut(s) | 76 |
| PaqCI | CACCTGC | 2 cut(s) | 1434, 1461 |
| PciI | ACATGT | 1 cut(s) | 1417 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1519 |
| PctI | GAATGC | 1 cut(s) | 694 |
| PdmI | GAANNNNTTC | 1 cut(s) | 735 |
| PfeI | GAWTC | 6 cut(s) | 41, 620, 722, 1300, 1535, 1543 |
| PleI | GAGTC | 1 cut(s) | 531 |
| PpsI | GAGTC | 1 cut(s) | 531 |
| Ppu21I | YACGTR | 1 cut(s) | 1680 |
| PpuMI | RGGWCCY | 1 cut(s) | 1127 |
| PscI | ACATGT | 1 cut(s) | 1417 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1125 |
| Psp1406I | AACGTT | 1 cut(s) | 1522 |
| Psp5II | RGGWCCY | 1 cut(s) | 1127 |
| Psp6I | CCWGG | 4 cut(s) | 69, 327, 1038, 1652 |
| PspFI | CCCAGC | 1 cut(s) | 697 |
| PspGI | CCWGG | 4 cut(s) | 69, 327, 1038, 1652 |
| PspN4I | GGNNCC | 4 cut(s) | 582, 679, 1128, 1651 |
| PspPI | GGNCC | 2 cut(s) | 1127, 1649 |
| PspPPI | RGGWCCY | 1 cut(s) | 1127 |
| PstI | CTGCAG | 1 cut(s) | 1446 |
| PstNI | CAGNNNCTG | 3 cut(s) | 20, 1014, 1453 |
| PsuI | RGATCY | 1 cut(s) | 1633 |
| PvuII | CAGCTG | 2 cut(s) | 816, 1441 |
| RsaI | GTAC | 2 cut(s) | 213, 942 |
| RsaNI | GTAC | 2 cut(s) | 212, 941 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1416, 1428 |
| SaqAI | TTAA | 8 cut(s) | 420, 552, 594, 608, 801, 873, 1100, 1287 |
| Sau3AI | GATC | 7 cut(s) | 61, 79, 267, 569, 1254, 1594, 1633 |
| Sau96I | GGNCC | 2 cut(s) | 1127, 1649 |
| SchI | GAGTC | 1 cut(s) | 532 |
| ScrFI | CCNGG | 4 cut(s) | 71, 329, 1040, 1654 |
| SduI | GDGCHC | 3 cut(s) | 1138, 1425, 1464 |
| SfaNI | GCATC | 2 cut(s) | 43, 624 |
| SfcI | CTRYAG | 2 cut(s) | 1436, 1442 |
| SinI | GGWCC | 2 cut(s) | 1127, 1649 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1416, 1428 |
| SphI | GCATGC | 1 cut(s) | 1051 |
| Sse9I | AATT | 8 cut(s) | 256, 286, 319, 543, 642, 957, 1354, 1665 |
| SspMI | CTAG | 4 cut(s) | 222, 231, 249, 1661 |
| StyD4I | CCNGG | 4 cut(s) | 69, 327, 1038, 1652 |
| StyI | CCWWGG | 1 cut(s) | 108 |
| TaaI | ACNGT | 3 cut(s) | 120, 502, 979 |
| TaiI | ACGT | 4 cut(s) | 50, 661, 1525, 1682 |
| TasI | AATT | 8 cut(s) | 256, 286, 319, 543, 642, 957, 1354, 1665 |
| TatI | WGTACW | 1 cut(s) | 940 |
| TfiI | GAWTC | 6 cut(s) | 41, 620, 722, 1300, 1535, 1543 |
| Tru1I | TTAA | 8 cut(s) | 420, 552, 594, 608, 801, 873, 1100, 1287 |
| Tru9I | TTAA | 8 cut(s) | 420, 552, 594, 608, 801, 873, 1100, 1287 |
| TscAI | CASTG | 3 cut(s) | 171, 1333, 1475 |
| TspDTI | ATGAA | 7 cut(s) | 65, 111, 296, 360, 461, 1170, 1446 |
| TspGWI | ACGGA | 1 cut(s) | 199 |
| TspRI | CASTG | 3 cut(s) | 171, 1333, 1475 |
| VneI | GTGCAC | 1 cut(s) | 1421 |
| VpaK11BI | GGWCC | 2 cut(s) | 1127, 1649 |
| XapI | RAATTY | 4 cut(s) | 256, 286, 319, 1354 |
| XceI | RCATGY | 2 cut(s) | 1051, 1421 |
| XmnI | GAANNNNTTC | 1 cut(s) | 735 |
| XspI | CTAG | 4 cut(s) | 222, 231, 249, 1661 |