The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| 2OG-FeII_Oxy_2 | PF13532 | 291 - 508 | 3e-44 | 2OG-Fe(II) oxygenase superfamily |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 91, 732 |
| AccII | CGCG | 2 cut(s) | 9, 60 |
| AciI | CCGC | 6 cut(s) | 39, 60, 87, 768, 1060, 1504 |
| AclWI | GGATC | 3 cut(s) | 1025, 1038, 1266 |
| AcoI | YGGCCR | 3 cut(s) | 61, 694, 1501 |
| AcsI | RAATTY | 4 cut(s) | 237, 997, 1156, 1331 |
| AcuI | CTGAAG | 1 cut(s) | 452 |
| AcyI | GRCGYC | 2 cut(s) | 127, 181 |
| AfaI | GTAC | 2 cut(s) | 801, 952 |
| AfeI | AGCGCT | 2 cut(s) | 488, 833 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 38, 86, 233, 517, 940, 946, 1070 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AgsI | TTSAA | 6 cut(s) | 336, 474, 854, 1118, 1178, 1361 |
| AjnI | CCWGG | 5 cut(s) | 226, 309, 939, 970, 1498 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1266, 1298 |
| Alw26I | GTCTC | 5 cut(s) | 930, 1031, 1253, 1286, 1309 |
| AlwI | GGATC | 3 cut(s) | 1025, 1038, 1266 |
| Ama87I | CYCGRG | 2 cut(s) | 18, 81 |
| Aor51HI | AGCGCT | 2 cut(s) | 488, 833 |
| AoxI | GGCC | 6 cut(s) | 61, 67, 508, 694, 1496, 1501 |
| ApeKI | GCWGC | 2 cut(s) | 223, 1325 |
| ApoI | RAATTY | 4 cut(s) | 237, 997, 1156, 1331 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 725, 757 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1156 |
| AspLEI | GCGC | 2 cut(s) | 489, 834 |
| AspS9I | GGNCC | 2 cut(s) | 245, 508 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 1049, 1355 |
| AsuNHI | GCTAGC | 1 cut(s) | 1166 |
| AvaI | CYCGRG | 2 cut(s) | 18, 81 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| AxyI | CCTNAGG | 1 cut(s) | 564 |
| BaeGI | GKGCMC | 1 cut(s) | 755 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BamHI | GGATCC | 1 cut(s) | 1030 |
| BauI | CACGAG | 1 cut(s) | 33 |
| BbsI | GAAGAC | 1 cut(s) | 1185 |
| BbvI | GCAGC | 2 cut(s) | 235, 1312 |
| BccI | CCATC | 7 cut(s) | 139, 193, 400, 705, 977, 1064, 1260 |
| BceAI | ACGGC | 1 cut(s) | 1122 |
| BciT130I | CCWGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| BclI | TGATCA | 1 cut(s) | 1345 |
| BcoDI | GTCTC | 5 cut(s) | 930, 1031, 1253, 1286, 1309 |
| BfaI | CTAG | 4 cut(s) | 537, 1041, 1167, 1244 |
| BfmI | CTRYAG | 1 cut(s) | 1326 |
| BfoI | RGCGCY | 2 cut(s) | 490, 835 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| BisI | GCNGC | 4 cut(s) | 61, 224, 1326, 1504 |
| BlsI | GCNGC | 4 cut(s) | 62, 225, 1327, 1505 |
| Bme1390I | CCNGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmeT110I | CYCGRG | 2 cut(s) | 18, 81 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 508 |
| BmiI | GGNNCC | 1 cut(s) | 1032 |
| BmrFI | CCNGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| BmsI | GCATC | 5 cut(s) | 136, 349, 397, 397, 1312 |
| BmtI | GCTAGC | 1 cut(s) | 1170 |
| BpiI | GAAGAC | 1 cut(s) | 1185 |
| BpmI | CTGGAG | 4 cut(s) | 249, 382, 975, 1410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| BsaHI | GRCGYC | 2 cut(s) | 127, 181 |
| BsaI | GGTCTC | 2 cut(s) | 930, 1253 |
| BsaJI | CCNNGG | 8 cut(s) | 64, 70, 82, 309, 837, 940, 1015, 1190 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 269, 299, 1233, 1263, 1266, 1296 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 38, 86, 233, 517, 940, 946, 1070 |
| Bse1I | ACTGG | 5 cut(s) | 903, 958, 1368, 1386, 1482 |
| Bse21I | CCTNAGG | 1 cut(s) | 564 |
| BseBI | CCWGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| BseDI | CCNNGG | 8 cut(s) | 64, 70, 82, 309, 837, 940, 1015, 1190 |
| BseGI | GGATG | 4 cut(s) | 340, 388, 1200, 1360 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 38, 86, 233, 517, 940, 946, 1070 |
| BseMII | CTCAG | 7 cut(s) | 113, 153, 336, 414, 444, 513, 1026 |
| BseNI | ACTGG | 5 cut(s) | 903, 958, 1368, 1386, 1482 |
| BseSI | GKGCMC | 1 cut(s) | 755 |
| BseXI | GCAGC | 2 cut(s) | 235, 1312 |
| BseYI | CCCAGC | 1 cut(s) | 1235 |
| Bsh1236I | CGCG | 2 cut(s) | 9, 60 |
| Bsh1285I | CGRYCG | 1 cut(s) | 91 |
| BshFI | GGCC | 6 cut(s) | 63, 69, 510, 696, 1498, 1503 |
| BsiEI | CGRYCG | 1 cut(s) | 91 |
| BsiHKCI | CYCGRG | 2 cut(s) | 18, 81 |
| BsiSI | CCGG | 1 cut(s) | 1495 |
| BslFI | GGGAC | 2 cut(s) | 291, 533 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 38, 86, 233, 517, 940, 946, 1070 |
| BsmAI | GTCTC | 5 cut(s) | 930, 1031, 1253, 1286, 1309 |
| BsmFI | GGGAC | 2 cut(s) | 291, 533 |
| BsmI | GAATGC | 1 cut(s) | 585 |
| BsnI | GGCC | 6 cut(s) | 63, 69, 510, 696, 1498, 1503 |
| Bso31I | GGTCTC | 2 cut(s) | 930, 1253 |
| BsoBI | CYCGRG | 2 cut(s) | 18, 81 |
| Bsp1286I | GDGCHC | 1 cut(s) | 755 |
| Bsp1407I | TGTACA | 1 cut(s) | 799 |
| Bsp143I | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| Bsp19I | CCATGG | 1 cut(s) | 837 |
| Bsp68I | TCGCGA | 1 cut(s) | 9 |
| BspACI | CCGC | 6 cut(s) | 39, 60, 87, 768, 1060, 1504 |
| BspANI | GGCC | 6 cut(s) | 63, 69, 510, 696, 1498, 1503 |
| BspCNI | CTCAG | 7 cut(s) | 112, 154, 337, 415, 445, 512, 1027 |
| BspFNI | CGCG | 2 cut(s) | 9, 60 |
| BspHI | TCATGA | 2 cut(s) | 118, 1066 |
| BspLI | GGNNCC | 1 cut(s) | 1032 |
| BspMAI | CTGCAG | 1 cut(s) | 1330 |
| BspOI | GCTAGC | 1 cut(s) | 1170 |
| BspPI | GGATC | 3 cut(s) | 1025, 1038, 1266 |
| BspQI | GCTCTTC | 1 cut(s) | 337 |
| BspTNI | GGTCTC | 2 cut(s) | 930, 1253 |
| BsrGI | TGTACA | 1 cut(s) | 799 |
| BsrI | ACTGG | 5 cut(s) | 903, 958, 1368, 1386, 1482 |
| BssECI | CCNNGG | 8 cut(s) | 64, 70, 82, 309, 837, 940, 1015, 1190 |
| BssMI | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| BssNI | GRCGYC | 2 cut(s) | 127, 181 |
| BssSI | CACGAG | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 2 cut(s) | 64, 837 |
| Bst2BI | CACGAG | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| Bst4CI | ACNGT | 3 cut(s) | 867, 980, 1436 |
| Bst6I | CTCTTC | 3 cut(s) | 337, 742, 798 |
| BstACI | GRCGYC | 2 cut(s) | 127, 181 |
| BstAUI | TGTACA | 1 cut(s) | 799 |
| BstC8I | GCNNGC | 2 cut(s) | 766, 1168 |
| BstDEI | CTNAG | 9 cut(s) | 99, 162, 345, 423, 453, 499, 564, 1035, 1467 |
| BstDSI | CCRYGG | 1 cut(s) | 837 |
| BstEII | GGTNACC | 1 cut(s) | 974 |
| BstF5I | GGATG | 4 cut(s) | 340, 388, 1200, 1360 |
| BstFNI | CGCG | 2 cut(s) | 9, 60 |
| BstH2I | RGCGCY | 2 cut(s) | 490, 835 |
| BstHHI | GCGC | 2 cut(s) | 489, 834 |
| BstKTI | GATC | 7 cut(s) | 13, 216, 915, 1033, 1057, 1261, 1348 |
| BstMAI | GTCTC | 5 cut(s) | 930, 1031, 1253, 1286, 1309 |
| BstMBI | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| BstMCI | CGRYCG | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 45, 66, 346, 770 |
| BstNI | CCWGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| BstNSI | RCATGY | 1 cut(s) | 319 |
| BstPI | GGTNACC | 1 cut(s) | 974 |
| BstSCI | CCNGG | 5 cut(s) | 226, 309, 939, 970, 1498 |
| BstSFI | CTRYAG | 1 cut(s) | 1326 |
| BstSLI | GKGCMC | 1 cut(s) | 755 |
| BstUI | CGCG | 2 cut(s) | 9, 60 |
| BstV1I | GCAGC | 2 cut(s) | 235, 1312 |
| BstV2I | GAAGAC | 1 cut(s) | 1185 |
| BstX2I | RGATCY | 1 cut(s) | 1030 |
| BstYI | RGATCY | 1 cut(s) | 1030 |
| Bsu36I | CCTNAGG | 1 cut(s) | 564 |
| BsuRI | GGCC | 6 cut(s) | 63, 69, 510, 696, 1498, 1503 |
| BtgI | CCRYGG | 1 cut(s) | 837 |
| BtsCI | GGATG | 4 cut(s) | 340, 388, 1200, 1360 |
| BtsIMutI | CAGTG | 2 cut(s) | 910, 1379 |
| BtuMI | TCGCGA | 1 cut(s) | 9 |
| Cac8I | GCNNGC | 2 cut(s) | 766, 1168 |
| CciI | TCATGA | 2 cut(s) | 118, 1066 |
| CfoI | GCGC | 2 cut(s) | 489, 834 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 508 |
| CseI | GACGC | 2 cut(s) | 116, 170 |
| CsiI | ACCWGGT | 1 cut(s) | 970 |
| Csp6I | GTAC | 2 cut(s) | 800, 951 |
| CviAII | CATG | 7 cut(s) | 119, 242, 316, 419, 838, 1067, 1086 |
| CviQI | GTAC | 2 cut(s) | 800, 951 |
| DdeI | CTNAG | 9 cut(s) | 99, 162, 345, 423, 453, 499, 564, 1035, 1467 |
| DpnI | GATC | 7 cut(s) | 12, 215, 914, 1032, 1056, 1260, 1347 |
| DpnII | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| EaeI | YGGCCR | 3 cut(s) | 61, 694, 1501 |
| Eam1104I | CTCTTC | 3 cut(s) | 337, 742, 798 |
| EarI | CTCTTC | 3 cut(s) | 337, 742, 798 |
| EciI | GGCGGA | 1 cut(s) | 54 |
| Eco130I | CCWWGG | 2 cut(s) | 64, 837 |
| Eco31I | GGTCTC | 2 cut(s) | 930, 1253 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco47III | AGCGCT | 2 cut(s) | 488, 833 |
| Eco57I | CTGAAG | 1 cut(s) | 452 |
| Eco81I | CCTNAGG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 2 cut(s) | 18, 81 |
| Eco91I | GGTNACC | 1 cut(s) | 974 |
| EcoO65I | GGTNACC | 1 cut(s) | 974 |
| EcoRI | GAATTC | 3 cut(s) | 237, 1156, 1331 |
| EcoRII | CCWGG | 5 cut(s) | 226, 309, 939, 970, 1498 |
| EcoT14I | CCWWGG | 2 cut(s) | 64, 837 |
| ErhI | CCWWGG | 2 cut(s) | 64, 837 |
| FaeI | CATG | 7 cut(s) | 122, 245, 319, 422, 841, 1070, 1089 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 396, 428, 1170, 1202 |
| FaqI | GGGAC | 2 cut(s) | 291, 533 |
| FatI | CATG | 7 cut(s) | 118, 241, 315, 418, 837, 1066, 1085 |
| FauNDI | CATATG | 1 cut(s) | 630 |
| FbaI | TGATCA | 1 cut(s) | 1345 |
| FblI | GTMKAC | 2 cut(s) | 91, 732 |
| Fnu4HI | GCNGC | 4 cut(s) | 61, 224, 1326, 1504 |
| FokI | GGATG | 4 cut(s) | 327, 375, 1207, 1367 |
| Fsp4HI | GCNGC | 4 cut(s) | 61, 224, 1326, 1504 |
| FspBI | CTAG | 4 cut(s) | 537, 1041, 1167, 1244 |
| GlaI | GCGC | 2 cut(s) | 488, 833 |
| GluI | GCNGC | 4 cut(s) | 61, 224, 1326, 1504 |
| GsaI | CCCAGC | 1 cut(s) | 1239 |
| GsuI | CTGGAG | 4 cut(s) | 249, 382, 975, 1410 |
| HaeII | RGCGCY | 2 cut(s) | 490, 835 |
| HaeIII | GGCC | 6 cut(s) | 63, 69, 510, 696, 1498, 1503 |
| HapII | CCGG | 1 cut(s) | 1495 |
| HgaI | GACGC | 2 cut(s) | 116, 170 |
| HhaI | GCGC | 2 cut(s) | 489, 834 |
| Hin1I | GRCGYC | 2 cut(s) | 127, 181 |
| Hin1II | CATG | 7 cut(s) | 122, 245, 319, 422, 841, 1070, 1089 |
| Hin6I | GCGC | 2 cut(s) | 487, 832 |
| HinP1I | GCGC | 2 cut(s) | 487, 832 |
| HincII | GTYRAC | 2 cut(s) | 92, 288 |
| HindII | GTYRAC | 2 cut(s) | 92, 288 |
| HinfI | GANTC | 9 cut(s) | 4, 55, 364, 503, 676, 734, 1385, 1415, 1510 |
| HpaII | CCGG | 1 cut(s) | 1495 |
| HphI | GGTGA | 3 cut(s) | 305, 1049, 1355 |
| Hpy166II | GTNNAC | 5 cut(s) | 92, 288, 733, 1219, 1274 |
| Hpy8I | GTNNAC | 5 cut(s) | 92, 288, 733, 1219, 1274 |
| HpyAV | CCTTC | 7 cut(s) | 162, 166, 197, 258, 373, 427, 431 |
| HpyCH4III | ACNGT | 3 cut(s) | 867, 980, 1436 |
| HpyCH4V | TGCA | 6 cut(s) | 149, 410, 583, 634, 1124, 1328 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 45, 66, 346, 770 |
| HpyF3I | CTNAG | 9 cut(s) | 99, 162, 345, 423, 453, 499, 564, 1035, 1467 |
| Hsp92I | GRCGYC | 2 cut(s) | 127, 181 |
| Hsp92II | CATG | 7 cut(s) | 122, 245, 319, 422, 841, 1070, 1089 |
| HspAI | GCGC | 2 cut(s) | 487, 832 |
| Ksp22I | TGATCA | 1 cut(s) | 1345 |
| Kzo9I | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| LguI | GCTCTTC | 1 cut(s) | 337 |
| LmnI | GCTCC | 5 cut(s) | 230, 839, 986, 1468, 1497 |
| Lsp1109I | GCAGC | 2 cut(s) | 235, 1312 |
| LweI | GCATC | 5 cut(s) | 136, 349, 397, 397, 1312 |
| MabI | ACCWGGT | 1 cut(s) | 970 |
| MaeI | CTAG | 4 cut(s) | 537, 1041, 1167, 1244 |
| MaeIII | GTNAC | 5 cut(s) | 620, 775, 890, 905, 974 |
| MalI | GATC | 7 cut(s) | 12, 215, 914, 1032, 1056, 1260, 1347 |
| MboI | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| MboII | GAAGA | 9 cut(s) | 324, 519, 729, 785, 829, 872, 1190, 1384, 1493 |
| MfeI | CAATTG | 1 cut(s) | 849 |
| MflI | RGATCY | 1 cut(s) | 1030 |
| MhlI | GDGCHC | 1 cut(s) | 755 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 3 cut(s) | 373, 685, 728 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1156 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 3 cut(s) | 468, 543, 885 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1071 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspA1I | CMGCKG | 2 cut(s) | 768, 1235 |
| MspI | CCGG | 1 cut(s) | 1495 |
| MspR9I | CCNGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| MunI | CAATTG | 1 cut(s) | 849 |
| Mva1269I | GAATGC | 1 cut(s) | 585 |
| MvaI | CCWGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| MvnI | CGCG | 2 cut(s) | 9, 60 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 45, 66, 346, 770 |
| NcoI | CCATGG | 1 cut(s) | 837 |
| NdeI | CATATG | 1 cut(s) | 630 |
| NdeII | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| NheI | GCTAGC | 1 cut(s) | 1166 |
| NlaIII | CATG | 7 cut(s) | 122, 245, 319, 422, 841, 1070, 1089 |
| NlaIV | GGNNCC | 1 cut(s) | 1032 |
| NmeAIII | GCCGAG | 2 cut(s) | 95, 959 |
| NmuCI | GTSAC | 2 cut(s) | 620, 905 |
| NruI | TCGCGA | 1 cut(s) | 9 |
| NspI | RCATGY | 1 cut(s) | 319 |
| PaeR7I | CTCGAG | 1 cut(s) | 18 |
| PagI | TCATGA | 2 cut(s) | 118, 1066 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 1 cut(s) | 337 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 40 |
| PctI | GAATGC | 1 cut(s) | 585 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1156 |
| PfeI | GAWTC | 6 cut(s) | 4, 55, 503, 1385, 1415, 1510 |
| PflFI | GACNNNGTC | 1 cut(s) | 1245 |
| PkrI | GCNGC | 4 cut(s) | 62, 225, 1327, 1505 |
| PleI | GAGTC | 3 cut(s) | 372, 684, 728 |
| PpsI | GAGTC | 3 cut(s) | 372, 684, 728 |
| PscI | ACATGT | 1 cut(s) | 315 |
| Psp6I | CCWGG | 5 cut(s) | 226, 309, 939, 970, 1498 |
| PspEI | GGTNACC | 1 cut(s) | 974 |
| PspFI | CCCAGC | 1 cut(s) | 1235 |
| PspGI | CCWGG | 5 cut(s) | 226, 309, 939, 970, 1498 |
| PspN4I | GGNNCC | 1 cut(s) | 1032 |
| PspPI | GGNCC | 2 cut(s) | 245, 508 |
| PspXI | VCTCGAGB | 1 cut(s) | 18 |
| PstI | CTGCAG | 1 cut(s) | 1330 |
| PsuI | RGATCY | 1 cut(s) | 1030 |
| PsyI | GACNNNGTC | 1 cut(s) | 1245 |
| PvuII | CAGCTG | 1 cut(s) | 1235 |
| RruI | TCGCGA | 1 cut(s) | 9 |
| RsaI | GTAC | 2 cut(s) | 801, 952 |
| RsaNI | GTAC | 2 cut(s) | 800, 951 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1071 |
| SalI | GTCGAC | 1 cut(s) | 90 |
| SapI | GCTCTTC | 1 cut(s) | 337 |
| SaqAI | TTAA | 3 cut(s) | 468, 543, 885 |
| SatI | GCNGC | 4 cut(s) | 61, 224, 1326, 1504 |
| Sau3AI | GATC | 7 cut(s) | 10, 213, 912, 1030, 1054, 1258, 1345 |
| Sau96I | GGNCC | 2 cut(s) | 245, 508 |
| SchI | GAGTC | 3 cut(s) | 373, 685, 728 |
| ScrFI | CCNGG | 5 cut(s) | 228, 311, 941, 972, 1500 |
| SduI | GDGCHC | 1 cut(s) | 755 |
| SexAI | ACCWGGT | 1 cut(s) | 970 |
| SfaNI | GCATC | 5 cut(s) | 136, 349, 397, 397, 1312 |
| SfcI | CTRYAG | 1 cut(s) | 1326 |
| Sfr274I | CTCGAG | 1 cut(s) | 18 |
| SinI | GGWCC | 1 cut(s) | 245 |
| SlaI | CTCGAG | 1 cut(s) | 18 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1071 |
| SmlI | CTYRAG | 2 cut(s) | 18, 156 |
| SmoI | CTYRAG | 2 cut(s) | 18, 156 |
| SsiI | CCGC | 6 cut(s) | 39, 60, 87, 768, 1060, 1504 |
| SspMI | CTAG | 4 cut(s) | 537, 1041, 1167, 1244 |
| StyD4I | CCNGG | 5 cut(s) | 226, 309, 939, 970, 1498 |
| StyI | CCWWGG | 2 cut(s) | 64, 837 |
| TaaI | ACNGT | 3 cut(s) | 867, 980, 1436 |
| TaqI | TCGA | 2 cut(s) | 19, 91 |
| TatI | WGTACW | 1 cut(s) | 799 |
| TauI | GCSGC | 2 cut(s) | 63, 1506 |
| TfiI | GAWTC | 6 cut(s) | 4, 55, 503, 1385, 1415, 1510 |
| Tru1I | TTAA | 3 cut(s) | 468, 543, 885 |
| Tru9I | TTAA | 3 cut(s) | 468, 543, 885 |
| TscAI | CASTG | 2 cut(s) | 910, 1386 |
| TseFI | GTSAC | 2 cut(s) | 620, 905 |
| TseI | GCWGC | 2 cut(s) | 223, 1325 |
| Tsp45I | GTSAC | 2 cut(s) | 620, 905 |
| TspDTI | ATGAA | 7 cut(s) | 17, 135, 230, 519, 678, 837, 1281 |
| TspGWI | ACGGA | 2 cut(s) | 312, 1274 |
| TspRI | CASTG | 2 cut(s) | 910, 1386 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1245 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| XapI | RAATTY | 4 cut(s) | 237, 997, 1156, 1331 |
| XceI | RCATGY | 1 cut(s) | 319 |
| XhoI | CTCGAG | 1 cut(s) | 18 |
| XmiI | GTMKAC | 2 cut(s) | 91, 732 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1156 |
| XspI | CTAG | 4 cut(s) | 537, 1041, 1167, 1244 |