Rorug04G0120600

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000113
Physical Location & Seq
Reverse (-)
19135870 .. 19140917
5048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0120600.1

Sequence Viewer

Length: 513 bp
ATGTTGGCCGTCAATCTGCAGAGGAAGATCCTAGATTGGAACAGGAACTGTGCAGCAACAACTGCGAGAGCTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTATATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTTCACGGGCAGAGCAAATACAAAAGACAGAGCAAATACGATGGGTATGTGGCATGGTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

170

Amino Acids

18.96

Weight (kDa)

9.69

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DcpS_C PF11969 74 - 150 1.6e-15 Scavenger mRNA decapping enzyme C-term binding
HIT PF01230 82 - 152 1.2e-14 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 267
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 6
AfeI AGCGCT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 71, 191, 215, 364
AluI AGCT 4 cut(s) 71, 191, 215, 364
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 6 cut(s) 53, 176, 179, 191, 194, 416
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 138, 283
AvaII GGWCC 2 cut(s) 138, 283
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
BccI CCATC 3 cut(s) 262, 344, 482
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 2 cut(s) 32, 381
BfmI CTRYAG 2 cut(s) 17, 192
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 126
BisI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
BlsI GCNGC 6 cut(s) 55, 178, 181, 193, 196, 418
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 2 cut(s) 138, 283
BmgT120I GGNCC 2 cut(s) 138, 283
BmiI GGNNCC 2 cut(s) 140, 315
BmrFI CCNGG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 3 cut(s) 280, 333, 355
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 27, 234
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 140, 315
BspMAI CTGCAG 2 cut(s) 21, 196
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 27, 234
BssNAI GTATAC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 50, 82
Bst6I CTCTTC 2 cut(s) 129, 165
BstAPI GCANNNNNTGC 2 cut(s) 62, 200
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 280, 333, 355
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 30, 237
BstMBI GATC 2 cut(s) 27, 234
BstMWI GCNNNNNNNGC 3 cut(s) 62, 188, 200
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 2 cut(s) 326, 389
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 2 cut(s) 17, 192
BstV1I GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 3 cut(s) 280, 333, 355
BveI ACCTGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 138, 283
CviAII CATG 3 cut(s) 323, 386, 501
CviJI RGCY 9 cut(s) 8, 71, 89, 176, 191, 215, 314, 364, 374
CviKI_1 RGCY 9 cut(s) 8, 71, 89, 176, 191, 215, 314, 364, 374
DdeI CTNAG 1 cut(s) 432
DpnI GATC 2 cut(s) 29, 236
DpnII GATC 2 cut(s) 27, 234
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 129, 165
EarI CTCTTC 2 cut(s) 129, 165
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 138, 283
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 2 cut(s) 138, 283
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 326, 389, 504
FaiI YATR 9 cut(s) 239, 268, 324, 387, 412, 414, 495, 502, 511
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 322, 385, 500
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
FokI GGATG 3 cut(s) 287, 320, 362
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
FspBI CTAG 2 cut(s) 32, 381
GlaI GCGC 1 cut(s) 157
GluI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 8
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 326, 389, 504
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 2 cut(s) 357, 404
HindII GTYRAC 2 cut(s) 357, 404
HinfI GANTC 1 cut(s) 377
HpaI GTTAAC 1 cut(s) 357
Hpy166II GTNNAC 3 cut(s) 268, 357, 404
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 3 cut(s) 268, 357, 404
HpyAV CCTTC 2 cut(s) 125, 434
HpyCH4III ACNGT 2 cut(s) 50, 82
HpyCH4V TGCA 5 cut(s) 19, 53, 194, 322, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 188, 200
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 3 cut(s) 326, 389, 504
HspAI GCGC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 27, 234
LmnI GCTCC 3 cut(s) 212, 220, 319
LpnPI CCDG 8 cut(s) 28, 121, 155, 272, 296, 299, 330, 350
Lsp1109I GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
MaeI CTAG 2 cut(s) 32, 381
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 29, 236
MboI GATC 2 cut(s) 27, 234
MboII GAAGA 5 cut(s) 37, 110, 116, 182, 440
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 117, 242
MnlI CCTC 6 cut(s) 15, 100, 132, 166, 203, 265
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 62, 188, 200
NdeII GATC 2 cut(s) 27, 234
NlaIII CATG 3 cut(s) 326, 389, 504
NlaIV GGNNCC 2 cut(s) 140, 315
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 326, 389
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 6 cut(s) 55, 178, 181, 193, 196, 418
PpuMI RGGWCCY 2 cut(s) 138, 283
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 2 cut(s) 138, 283
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 140, 315
PspPI GGNCC 2 cut(s) 138, 283
PspPPI RGGWCCY 2 cut(s) 138, 283
PstI CTGCAG 2 cut(s) 21, 196
PstNI CAGNNNCTG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 27
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
Sau3AI GATC 2 cut(s) 27, 234
Sau96I GGNCC 2 cut(s) 138, 283
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 73, 140, 189, 193, 217, 285, 366, 445
SfcI CTRYAG 2 cut(s) 17, 192
SinI GGWCC 2 cut(s) 138, 283
Sse9I AATT 1 cut(s) 100
SspI AATATT 2 cut(s) 225, 396
SspMI CTAG 2 cut(s) 32, 381
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 50, 82
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 100
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 6 cut(s) 53, 176, 179, 191, 194, 416
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 138, 283
XceI RCATGY 2 cut(s) 326, 389
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 32, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.