Rmu_co8317779.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8317779.1
OG0000113
Physical Location & Seq
Reverse (-)
76 .. 849
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8317779.1_g000001.1.cds

Sequence Viewer

Length: 774 bp
atgcgtttccggtgcgtctgcaaatcatggcgtgctttgatctccgaatcctattttgtaaagaaacacttgagctacggagagagaggcatcaccgagagcactcccagattcattttcatgttggatcctcccttgtccttggactttgaagccttgatgaaggatgatgattgcgatggcgctgctggtggtcagtctgcagtcactcagttggattttccggtaccgaaaactatccctgattacggttggagagttgttattggctcttgcaatggcttggtatgtctagaagttccccccgaggccattatgttatggaaccctggtacaagagactccaaggttttaccaaaacctccttgtgttttaaactccgggtttaactactgtttttatggatttgggtatgattctgctagtgacgactacaaggtgatacgggggttcactaatgatcttgctaagacaatcatgattcacatattttcactgaaaacaggtacatggagggttctcaaagacattgattatgttacatttaaaacgtggcaggggttgttcttaaacggagctctgcattggttatataatctacctgaagggggctcaagaattttggcttttgatttagaggcagagaaatttcacaagacgattccattaccctgtgatgactggttttatgatcccttgattcataaaaattgtctctgtgtagttgcttcccctactggaaatgacagtttcaacatatggatgatgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

257

Amino Acids

29.19

Weight (kDa)

5.96

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AclWI GGATC 3 cut(s) 122, 135, 686
AcsI RAATTY 2 cut(s) 618, 647
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 3 cut(s) 228, 334, 508
AfiI CCNNNNNNNGG 2 cut(s) 248, 608
AgsI TTSAA 2 cut(s) 152, 754
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 2 cut(s) 75, 578
AluI AGCT 2 cut(s) 75, 578
Alw21I GWGCWC 2 cut(s) 104, 580
Alw26I GTCTC 2 cut(s) 333, 719
AlwI GGATC 3 cut(s) 122, 135, 686
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 618, 647
Asp718I GGTACC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 85, 451
AvaI CYCGRG 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 434, 467
BamHI GGATCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 580, 614
Bbv12I GWGCWC 2 cut(s) 104, 580
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 333, 719
BfaI CTAG 2 cut(s) 293, 423
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 186
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 330, 382
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 3 cut(s) 129, 228, 326
BmrFI CCNGG 2 cut(s) 330, 382
BmsI GCATC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 91, 598
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 4 cut(s) 141, 306, 328, 345
BsaWI WCCGGW 2 cut(s) 9, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 608
Bse1I ACTGG 2 cut(s) 686, 742
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 141, 306, 328, 345
BseGI GGATG 2 cut(s) 172, 768
BseLI CCNNNNNNNGG 2 cut(s) 248, 608
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 686, 742
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 104, 580
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 10, 224, 381
BslI CCNNNNNNNGG 2 cut(s) 248, 608
BsmAI GTCTC 2 cut(s) 333, 719
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 3 cut(s) 104, 580, 614
Bsp143I GATC 4 cut(s) 39, 127, 460, 691
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 129, 228, 326
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 3 cut(s) 122, 135, 686
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 2 cut(s) 686, 742
BssECI CCNNGG 4 cut(s) 141, 306, 328, 345
BssMI GATC 4 cut(s) 39, 127, 460, 691
BssT1I CCWWGG 2 cut(s) 141, 345
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 251, 395, 749
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 210, 468
BstF5I GGATG 2 cut(s) 172, 768
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 4 cut(s) 42, 130, 463, 694
BstMAI GTCTC 2 cut(s) 333, 719
BstMBI GATC 4 cut(s) 39, 127, 460, 691
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 328, 380
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 172, 768
BtsIMutI CAGTG 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 185
CseI GACGC 1 cut(s) 4
Csp6I GTAC 3 cut(s) 227, 333, 507
CviAII CATG 4 cut(s) 27, 121, 478, 510
CviJI RGCY 8 cut(s) 75, 155, 270, 282, 311, 578, 612, 626
CviKI_1 RGCY 8 cut(s) 75, 155, 270, 282, 311, 578, 612, 626
CviQI GTAC 3 cut(s) 227, 333, 507
DdeI CTNAG 2 cut(s) 210, 468
DpnI GATC 4 cut(s) 41, 129, 462, 693
DpnII GATC 4 cut(s) 39, 127, 460, 691
DraI TTTAAA 2 cut(s) 375, 547
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 2 cut(s) 141, 345
Eco24I GRGCYC 2 cut(s) 580, 614
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 141, 345
EcoT38I GRGCYC 2 cut(s) 580, 614
ErhI CCWWGG 2 cut(s) 141, 345
FaeI CATG 4 cut(s) 30, 124, 481, 513
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 4 cut(s) 26, 120, 477, 509
FauNDI CATATG 1 cut(s) 758
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 2 cut(s) 580, 614
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 293, 423
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 1 cut(s) 311
HapII CCGG 3 cut(s) 10, 224, 381
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 185
Hin1II CATG 4 cut(s) 30, 124, 481, 513
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 7 cut(s) 47, 111, 341, 416, 481, 661, 700
HpaII CCGG 3 cut(s) 10, 224, 381
HphI GGTGA 2 cut(s) 85, 451
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 293, 478, 615
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 157, 599
HpyCH4III ACNGT 3 cut(s) 251, 395, 749
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 4 cut(s) 21, 203, 276, 583
HpyF3I CTNAG 2 cut(s) 210, 468
HpySE526I ACGT 1 cut(s) 551
Hsp92II CATG 4 cut(s) 30, 124, 481, 513
HspAI GCGC 1 cut(s) 183
KpnI GGTACC 1 cut(s) 230
Kzo9I GATC 4 cut(s) 39, 127, 460, 691
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 293, 423
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 3 cut(s) 205, 425, 538
MalI GATC 4 cut(s) 41, 129, 462, 693
MboI GATC 4 cut(s) 39, 127, 460, 691
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 3 cut(s) 104, 580, 614
MluCI AATT 3 cut(s) 618, 647, 709
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 3 cut(s) 105, 195, 233
MnlI CCTC 6 cut(s) 80, 141, 301, 372, 507, 631
MseI TTAA 4 cut(s) 374, 387, 546, 569
MslI CAYNNNNRTG 2 cut(s) 119, 761
MspI CCGG 3 cut(s) 10, 224, 381
MspR9I CCNGG 2 cut(s) 330, 382
MvaI CCWGG 1 cut(s) 330
NciI CCSGG 1 cut(s) 382
NdeI CATATG 1 cut(s) 758
NdeII GATC 4 cut(s) 39, 127, 460, 691
NlaIII CATG 4 cut(s) 30, 124, 481, 513
NlaIV GGNNCC 3 cut(s) 129, 228, 326
NmuCI GTSAC 2 cut(s) 205, 425
PagI TCATGA 1 cut(s) 477
PfeI GAWTC 6 cut(s) 47, 111, 416, 481, 661, 700
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 129, 228, 326
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 228, 334, 508
RsaNI GTAC 3 cut(s) 227, 333, 507
RseI CAYNNNNRTG 2 cut(s) 119, 761
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 4 cut(s) 374, 387, 546, 569
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 39, 127, 460, 691
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 330, 382
SduI GDGCHC 3 cut(s) 104, 580, 614
SetI ASST 8 cut(s) 77, 351, 364, 441, 508, 554, 580, 604
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 119, 761
SmlI CTYRAG 2 cut(s) 70, 613
SmoI CTYRAG 2 cut(s) 70, 613
Sse9I AATT 3 cut(s) 618, 647, 709
SspMI CTAG 2 cut(s) 293, 423
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 2 cut(s) 328, 380
StyI CCWWGG 2 cut(s) 141, 345
TaaI ACNGT 3 cut(s) 251, 395, 749
TaiI ACGT 1 cut(s) 554
TasI AATT 3 cut(s) 618, 647, 709
TfiI GAWTC 6 cut(s) 47, 111, 416, 481, 661, 700
Tru1I TTAA 4 cut(s) 374, 387, 546, 569
Tru9I TTAA 4 cut(s) 374, 387, 546, 569
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 2 cut(s) 205, 425
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 205, 425
TspDTI ATGAA 4 cut(s) 103, 109, 176, 692
TspGWI ACGGA 2 cut(s) 93, 588
TspRI CASTG 1 cut(s) 501
XapI RAATTY 2 cut(s) 618, 647
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 2 cut(s) 293, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.