Rmu_sc0000864.1_g000002

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000864.1
Physical Location & Seq
Reverse (-)
6492 .. 6926
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000864.1_g000002.1.cds

Sequence Viewer

Length: 435 bp
atggcggcggaggagggcggcgtctgtaagcgagctcacaccgagttcgacgacggcgaaatcatttcagagattctggcgaggctaccggtcaaatgtgtgatgcgattccggtgcgtatccaagtggtggaattctctgatctccgatccttacttcactaagaagcacttgaggtacgcagagatgggcatcaccgagaacagctccaggctcctttattccatggaccctccgcaatctctagaccacgaggcattgaaggatttgaaggatcatagtgatgtttattttgccaacagagagcttggtcttccggtaatgttggcgggctactccaattgctataaaattattgttggtagttgcaatggcttaatatgtattttcgttgaagcagtcgactttatcttatggaatccatgtactggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.33

Weight (kDa)

5.53

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 129, 428
AccI GTMKAC 1 cut(s) 402
AciI CCGC 5 cut(s) 5, 8, 18, 236, 329
AclWI GGATC 2 cut(s) 143, 282
AcsI RAATTY 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 179, 427
AfiI CCNNNNNNNGG 2 cut(s) 129, 428
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 262, 271, 395
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 3 cut(s) 35, 207, 307
AluI AGCT 3 cut(s) 35, 207, 307
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 2 cut(s) 143, 282
ApoI RAATTY 1 cut(s) 133
AsiGI ACCGGT 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 37
BauI CACGAG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 211
BciVI GTATCC 1 cut(s) 130
BfaI CTAG 1 cut(s) 245
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 2 cut(s) 6, 19
BlsI GCNGC 2 cut(s) 7, 20
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 215, 231
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 93, 201
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 3 cut(s) 88, 111, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 428
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 129, 428
BseMI GCAATG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 26
BshTI ACCGGT 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 89, 112, 317
BslI CCNNNNNNNGG 2 cut(s) 129, 428
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 141, 148, 274
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 5 cut(s) 5, 8, 18, 236, 329
BspLI GGNNCC 2 cut(s) 215, 231
BspPI GGATC 2 cut(s) 143, 282
BsrDI GCAATG 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 141, 148, 274
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 33, 331
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 225
BstKTI GATC 3 cut(s) 144, 151, 277
BstMBI GATC 3 cut(s) 141, 148, 274
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 305
BsuI GTATCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 33, 331
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 178, 426
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 226, 423
CviJI RGCY 7 cut(s) 35, 85, 207, 214, 307, 333, 375
CviKI_1 RGCY 7 cut(s) 35, 85, 207, 214, 307, 333, 375
CviQI GTAC 2 cut(s) 178, 426
DdeI CTNAG 1 cut(s) 162
DpnI GATC 3 cut(s) 143, 150, 276
DpnII GATC 3 cut(s) 141, 148, 274
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 229, 426
FaiI YATR 6 cut(s) 227, 279, 348, 382, 415, 424
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 2 cut(s) 225, 422
FauI CCCGC 1 cut(s) 322
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 6, 19
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 6, 19
FspBI CTAG 1 cut(s) 245
GluI GCNGC 2 cut(s) 6, 19
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 3 cut(s) 89, 112, 317
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 229, 426
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 73, 108, 418
HpaII CCGG 3 cut(s) 89, 112, 317
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 70, 141, 148
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 2 cut(s) 53, 56
HpyAV CCTTC 2 cut(s) 256, 265
HpyCH4V TGCA 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 229, 426
Kzo9I GATC 3 cut(s) 141, 148, 274
LmnI GCTCC 2 cut(s) 212, 219
LpnPI CCDG 7 cut(s) 62, 102, 125, 196, 223, 330, 414
LweI GCATC 2 cut(s) 93, 201
MaeI CTAG 1 cut(s) 245
MalI GATC 3 cut(s) 143, 150, 276
MboI GATC 3 cut(s) 141, 148, 274
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 3 cut(s) 133, 340, 351
MnlI CCTC 6 cut(s) 4, 7, 75, 168, 243, 247
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 3 cut(s) 89, 112, 317
MspR9I CCNGG 1 cut(s) 211
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 225
NdeII GATC 3 cut(s) 141, 148, 274
NlaIII CATG 2 cut(s) 229, 426
NlaIV GGNNCC 2 cut(s) 215, 231
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 3 cut(s) 73, 108, 418
PflMI CCANNNNNTGG 2 cut(s) 129, 428
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 7, 20
Psp124BI GAGCTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 215, 231
PspPI GGNCC 1 cut(s) 229
RsaI GTAC 2 cut(s) 179, 427
RsaNI GTAC 2 cut(s) 178, 426
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 37
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 6, 19
Sau3AI GATC 3 cut(s) 141, 148, 274
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 37
SetI ASST 4 cut(s) 37, 179, 209, 309
SfaNI GCATC 2 cut(s) 93, 201
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 3 cut(s) 133, 340, 351
SsiI CCGC 5 cut(s) 5, 8, 18, 236, 329
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 48, 402
TasI AATT 3 cut(s) 133, 340, 351
TatI WGTACW 1 cut(s) 425
TauI GCSGC 2 cut(s) 8, 21
TfiI GAWTC 3 cut(s) 73, 108, 418
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
Van91I CCANNNNNTGG 2 cut(s) 129, 428
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.