Rmu_co8407145.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8407145.1
OG0000113
Physical Location & Seq
Reverse (-)
469 .. 1275
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8407145.1_g000001.1.cds

Sequence Viewer

Length: 807 bp
atgatcccggagttttccaatcgttataaaagtattgttggttgttgcaatggcttaatatgtttttccgtccaaggggacgactttatcttgtggaatccatgcactagatactccaagctgttaccgagaactccattgcctgttttcaatcggcacgctttttgtgggtttggttatgattctgctaatgatgattacaaggtattagtggggactaaaatgtgcgaagaaattaccattcaggttttcgctctaaaaacgagttcatggaaggtgctccccattaccaatgctcttagcatctcaggtcggggcttctttttgaatggagctttgcactggttaacgagggttgagccaaatcgagggaatagccgaacaattttgtcttttgatttggcggaggagaagtttcatgagatgataccattaccctatgatgatgatgatggctttgatggtatgacgattcttagaaattgtctttgtgtgtttaatttcttagttgggcgggctggtgttagcacaatatggttgatgaaggaatatggggtgaagcaatcttggactcaagttattaggtgttctaaaagggaaattcctaaagagtacagactcctgttcttgcagcctatttgtattctagagaatggagaacttgtagttaataattttcgtgcaggtttcttggtgttatatgatccaaaggaaaatacattcaagaatgttaccaagactcataatgaattgaattgtggagctttagtttacagagagactttagtttcaccagtaagtcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

268

Amino Acids

30.6

Weight (kDa)

7.97

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
Acc36I ACCTGC 1 cut(s) 674
AciI CCGC 2 cut(s) 404, 514
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 600
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 2 cut(s) 75, 368
AgsI TTSAA 4 cut(s) 151, 328, 724, 754
AluBI AGCT 3 cut(s) 121, 335, 764
AluI AGCT 3 cut(s) 121, 335, 764
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 773
AlwI GGATC 1 cut(s) 698
ApeKI GCWGC 1 cut(s) 631
ApoI RAATTY 1 cut(s) 600
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 568, 783
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 643
BccI CCATC 2 cut(s) 446, 455
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 2 cut(s) 108, 647
BfuAI ACCTGC 1 cut(s) 674
BisI GCNGC 1 cut(s) 632
BlsI GCNGC 1 cut(s) 633
Bme1390I CCNGG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 6 cut(s) 398, 428, 648, 678, 753, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 368
Bse1I ACTGG 2 cut(s) 347, 794
Bse3DI GCAATG 2 cut(s) 55, 137
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 75, 368
BseMI GCAATG 2 cut(s) 55, 137
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 347, 794
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 92, 229
BslI CCNNNNNNNGG 2 cut(s) 75, 368
BsmAI GTCTC 1 cut(s) 773
BsmFI GGGAC 2 cut(s) 92, 229
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 3, 703
BspACI CCGC 2 cut(s) 404, 514
BspCNI CTCAG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 1 cut(s) 698
BsrDI GCAATG 2 cut(s) 55, 137
BsrI ACTGG 2 cut(s) 347, 794
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 3, 703
BssT1I CCWWGG 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 159, 516
BstDEI CTNAG 4 cut(s) 299, 307, 476, 505
BstKTI GATC 2 cut(s) 6, 706
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 2 cut(s) 3, 703
BstSCI CCNGG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 643
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 2 cut(s) 159, 516
CciI TCATGA 1 cut(s) 418
Csp6I GTAC 1 cut(s) 613
CviAII CATG 3 cut(s) 102, 270, 419
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 4 cut(s) 299, 307, 476, 505
DpnI GATC 2 cut(s) 5, 705
DpnII GATC 2 cut(s) 3, 703
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 3 cut(s) 105, 273, 422
FaqI GGGAC 2 cut(s) 92, 229
FatI CATG 3 cut(s) 101, 269, 418
FauI CCCGC 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 632
Fsp4HI GCNGC 1 cut(s) 632
FspBI CTAG 2 cut(s) 108, 647
GluI GCNGC 1 cut(s) 632
HapII CCGG 1 cut(s) 8
Hin1II CATG 3 cut(s) 105, 273, 422
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 6 cut(s) 97, 182, 472, 571, 618, 739
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 568, 783
Hpy166II GTNNAC 2 cut(s) 348, 772
Hpy188III TCNNGA 3 cut(s) 419, 647, 724
Hpy8I GTNNAC 2 cut(s) 348, 772
HpyAV CCTTC 2 cut(s) 268, 538
HpyCH4V TGCA 5 cut(s) 48, 105, 340, 631, 683
HpyF3I CTNAG 4 cut(s) 299, 307, 476, 505
Hsp92II CATG 3 cut(s) 105, 273, 422
KspAI GTTAAC 1 cut(s) 348
Kzo9I GATC 2 cut(s) 3, 703
LmnI GCTCC 3 cut(s) 285, 332, 761
LpnPI CCDG 8 cut(s) 21, 156, 230, 294, 328, 504, 635, 669
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 108, 647
MaeIII GTNAC 2 cut(s) 123, 730
MalI GATC 2 cut(s) 5, 705
MboI GATC 2 cut(s) 3, 703
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 8 cut(s) 234, 384, 481, 499, 600, 673, 749, 754
MlyI GAGTC 3 cut(s) 565, 612, 733
MnlI CCTC 3 cut(s) 345, 362, 400
MseI TTAA 4 cut(s) 56, 347, 498, 669
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 8
NciI CCSGG 1 cut(s) 8
NdeII GATC 2 cut(s) 3, 703
NlaIII CATG 3 cut(s) 105, 273, 422
PagI TCATGA 1 cut(s) 418
PfeI GAWTC 3 cut(s) 97, 182, 472
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 1 cut(s) 633
PleI GAGTC 3 cut(s) 565, 612, 733
PpsI GAGTC 3 cut(s) 565, 612, 733
PsiI TTATAA 1 cut(s) 27
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
SaqAI TTAA 4 cut(s) 56, 347, 498, 669
SatI GCNGC 1 cut(s) 632
Sau3AI GATC 2 cut(s) 3, 703
SchI GAGTC 3 cut(s) 565, 612, 733
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 282
SetI ASST 9 cut(s) 123, 207, 249, 279, 313, 337, 587, 688, 766
SfaNI GCATC 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 8 cut(s) 234, 384, 481, 499, 600, 673, 749, 754
SsiI CCGC 2 cut(s) 404, 514
SspMI CTAG 2 cut(s) 108, 647
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 367
TasI AATT 8 cut(s) 234, 384, 481, 499, 600, 673, 749, 754
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 3 cut(s) 97, 182, 472
Tru1I TTAA 4 cut(s) 56, 347, 498, 669
Tru9I TTAA 4 cut(s) 56, 347, 498, 669
TscAI CASTG 1 cut(s) 347
TseI GCWGC 1 cut(s) 631
TspDTI ATGAA 4 cut(s) 258, 407, 557, 762
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 347
XapI RAATTY 1 cut(s) 600
XbaI TCTAGA 1 cut(s) 646
XspI CTAG 2 cut(s) 108, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.