Rh2DG531100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000113
Physical Location & Seq
Reverse (-)
76026369 .. 76027568
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG531100.1

Sequence Viewer

Length: 225 bp
ATGAACGGGATGAGTTTCGTAGGATGTAATTTGGTTGCAAGAGTTGGAAATATTAGAAATTCTTTAATCTTACACTGTGGACCCATCTCGACCAGACCCATCTCAACCAGTTCTAGGCAAGTAGTTGTTACCATGGAAGTACAACAGCAAAGAAGCACATTGAAGCTAAAGGTGGAACAAACTAAGCGAGAGCATGCAGGAGCTCCATCCTACAACAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

10.43

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 2 cut(s) 166, 203
AluI AGCT 2 cut(s) 166, 203
Alw21I GWGCWC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 205
BccI CCATC 3 cut(s) 92, 107, 214
BfaI CTAG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 15, 29, 206
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 15, 29, 206
BstNSI RCATGY 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 3 cut(s) 15, 29, 206
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 140
CviAII CATG 3 cut(s) 133, 194, 222
CviJI RGCY 2 cut(s) 166, 203
CviKI_1 RGCY 2 cut(s) 166, 203
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 136, 197, 225
FaiI YATR 3 cut(s) 134, 195, 223
FatI CATG 3 cut(s) 132, 193, 221
FokI GGATG 3 cut(s) 22, 36, 193
FriOI GRGCYC 1 cut(s) 205
FspBI CTAG 1 cut(s) 114
Hin1II CATG 3 cut(s) 136, 197, 225
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 38, 197
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 3 cut(s) 136, 197, 225
LmnI GCTCC 2 cut(s) 200, 208
LpnPI CCDG 3 cut(s) 106, 121, 183
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 28, 58
MmeI TCCRAC 1 cut(s) 25
MseI TTAA 1 cut(s) 65
NcoI CCATGG 1 cut(s) 132
NlaIII CATG 3 cut(s) 136, 197, 225
NlaIV GGNNCC 1 cut(s) 82
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 80
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SacI GAGCTC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 205
SetI ASST 3 cut(s) 168, 174, 205
SinI GGWCC 1 cut(s) 80
SphI GCATGC 1 cut(s) 197
Sse9I AATT 2 cut(s) 28, 58
SspI AATATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 205
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 89
TasI AATT 2 cut(s) 28, 58
TatI WGTACW 1 cut(s) 139
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 197
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.