Rroxscaffold_3G00250730

F-box Kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000113
Physical Location & Seq
Forward (+)
44512951 .. 44513664
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250730.1

Sequence Viewer

Length: 453 bp
ATGGAACGCTTAAACGGCCTCGTCTTTGAGTCCCATATCGACCACGCTCGGGTTGTTGAGATACTGTCGAGGCTACCAGTCAAAACATTTAAAGTGATTCAGTGCGTCTGTAAGTCATGGCATGATTTAATCTCGGACTCTCATCTTATTTTGAAGCACACCAGGAGGAGCAGCTCAAAGTTAAAGCTCGTTGTTTCAACTGATCCTCCCCATTCCATAGACTATGAAGCATTAAAGAATCATGGCCACGGACAAATCGCAACCACACAACTCGGATTTTATTCATCAGATTGGTCTCCGGATGGTCATGATCTCACCATTTGTGGGATCTTGCAATGGATTAATATGTCTACGAGGACCCTATTATGGAGAATACTCAACGTTCTTCACATATTTATGAACTCTTCCATTAAGGACTGCAATGTGATCATACGCGGTCAAAACCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

150

Amino Acids

17.19

Weight (kDa)

9.0

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 49 1e-05 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 350
AccII CGCG 1 cut(s) 435
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 435
AclI AACGTT 1 cut(s) 381
AclWI GGATC 2 cut(s) 197, 335
AcoI YGGCCR 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 49, 324, 366
AgsI TTSAA 2 cut(s) 154, 198
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 2 cut(s) 174, 187
AluI AGCT 2 cut(s) 174, 187
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 2 cut(s) 197, 335
Ama87I CYCGRG 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 2 cut(s) 16, 244
ApeKI GCWGC 1 cut(s) 171
AseI ATTAAT 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 246
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 300
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 324, 366
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 2 cut(s) 341, 427
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 49, 324, 366
BseMI GCAATG 2 cut(s) 341, 427
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 2 cut(s) 18, 246
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 49, 324, 366
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 16
BsnI GGCC 2 cut(s) 18, 246
Bso31I GGTCTC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 48
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 4 cut(s) 202, 310, 327, 426
BspACI CCGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 18, 246
BspEI TCCGGA 1 cut(s) 298
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 2 cut(s) 197, 335
BspTNI GGTCTC 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 341, 427
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 4 cut(s) 202, 310, 327, 426
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 409
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 4 cut(s) 205, 313, 330, 429
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 4 cut(s) 202, 310, 327, 426
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 18, 246
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 107
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 94
CviAII CATG 4 cut(s) 117, 122, 242, 308
CviJI RGCY 5 cut(s) 18, 73, 174, 187, 246
CviKI_1 RGCY 5 cut(s) 18, 73, 174, 187, 246
DpnI GATC 4 cut(s) 204, 312, 329, 428
DpnII GATC 4 cut(s) 202, 310, 327, 426
DraI TTTAAA 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 120, 125, 245, 311
FaqI GGGAC 1 cut(s) 16
FatI CATG 4 cut(s) 116, 121, 241, 307
FbaI TGATCA 1 cut(s) 426
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 18, 246
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 120, 125, 245, 311
HinfI GANTC 4 cut(s) 29, 97, 137, 238
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 3 cut(s) 136, 275, 289
Hpy188III TCNNGA 2 cut(s) 299, 308
Hpy8I GTNNAC 1 cut(s) 351
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 334, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 4 cut(s) 120, 125, 245, 311
Kpn2I TCCGGA 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 4 cut(s) 202, 310, 327, 426
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 90, 148, 175, 312
Lsp1109I GCAGC 1 cut(s) 183
MaeII ACGT 1 cut(s) 381
MalI GATC 4 cut(s) 204, 312, 329, 428
MboI GATC 4 cut(s) 202, 310, 327, 426
MboII GAAGA 2 cut(s) 377, 396
MflI RGATCY 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 2 cut(s) 38, 131
MnlI CCTC 5 cut(s) 29, 63, 159, 216, 348
Mox20I TGGCCA 1 cut(s) 246
MroI TCCGGA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 246
MseI TTAA 7 cut(s) 11, 90, 128, 182, 233, 342, 411
MslI CAYNNNNRTG 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 4 cut(s) 202, 310, 327, 426
NlaIII CATG 4 cut(s) 120, 125, 245, 311
NlaIV GGNNCC 1 cut(s) 359
PagI TCATGA 1 cut(s) 307
PfeI GAWTC 2 cut(s) 97, 238
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 2 cut(s) 37, 131
PpsI GAGTC 2 cut(s) 37, 131
PpuMI RGGWCCY 1 cut(s) 357
PshBI ATTAAT 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
PsuI RGATCY 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 7 cut(s) 11, 90, 128, 182, 233, 342, 411
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 4 cut(s) 202, 310, 327, 426
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 2 cut(s) 38, 131
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 176, 189, 384
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 395
SsiI CCGC 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 39, 68
TfiI GAWTC 2 cut(s) 97, 238
Tru1I TTAA 7 cut(s) 11, 90, 128, 182, 233, 342, 411
Tru9I TTAA 7 cut(s) 11, 90, 128, 182, 233, 342, 411
TscAI CASTG 1 cut(s) 107
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 3 cut(s) 240, 273, 413
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 357
VspI ATTAAT 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.