FvH4_1g03000

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000113
Physical Location & Seq
Reverse (-)
1695831 .. 1697208
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03000.t1

Sequence Viewer

Length: 1059 bp
ATGCAAATCTATGGCAGTTGCAATGGTTTGATATGTGTTGAGCTTGATTATGTCAATATTTTAGTTTGGAACCCTTATACCGGAGAGTCTAAGCTGTTGCCGAAACCTAATGTTTGTAATGATGTTACAACTGACATGTATGGGTTCGGCTATGATTCCAGTAGTGGAGATTACAAGGTGGTTCGAGGTAGTTGGAGTAATGACGGTGGAAGTGTGGTTGAGGTATTTACTCTGAAGAGTGGCTTGTGGCGGCAGTGGTGCGTTGATTTTGTGTTGGATGGGCAGGGCTGCTTTTTGAATGGAGCGCTACATTGGGTGCAGCTTGAGTGGGAGGACTGGGAATACATAGTTGGTGCGAAGATAGTGTCGTTTGATTTGGCAGAGGAGAAGTTTGAGGAGATGGTGCAATGCCCTGATCCTGTTGCTGAGTGTGAGGAGTGTTACTGCTCTGTGGGAATTGGGGTGATTGAAGACTGTCTCACTGTTTGCATTGAGCCGAATGAGAGTGATTTGAGTATTTGGATGATGAAGGAGTATGGAGTGAAAGAGTCTTGGAATGAAGTTGTGAGCATATCGAGAGAGGCTTTACCTAAAGAGCTTAATTTAAGTTTGAGGCCTCTAAGCATATCAAAGGATGGTGAAGTTTTCTTGAATCTTAATAGAAATGTCTTCGCATTGTATAGTTCCAAAGATAAGAGATTCAAAGCTGTTGCTTTGACTCATCAGCATGTTGATTTTGATACAGCTATTTATGCAGAGAGTTTAGTCTCACCGGTGACAGGCCATCTTGCCAAACAGACATGGGAGCAGCATATTATGAGAAGGCACATGAACACCAACAGCTCCAAAATACTTCTCCCAATTCCTTTGTACTCTGTTGACTATGAAGCACTATTGAAGTATGTGAAGGAAGTCGATGTTCATTTAGCAAGCAAGTACTTTGACTATCCAATACTGATCCGTAATCTCAATCAACTATTCTCTGGTCATGCAACAAGCAGAGTTTTTCAGTGTGCAAATCTATGGTTCTTGCAATGGCTTGATATGCTTGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

353

Amino Acids

40.13

Weight (kDa)

4.79

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 219 1.3e-19 F-box associated beta propeller domain
FBA_1 PF07734 6 - 256 8.7e-29 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 250
AclWI GGATC 2 cut(s) 410, 952
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 872, 938
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 80, 779
AflIII ACRYGT 1 cut(s) 135
AgeI ACCGGT 1 cut(s) 772
AgsI TTSAA 5 cut(s) 298, 470, 652, 703, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 7 cut(s) 43, 94, 322, 598, 707, 746, 843
AluI AGCT 7 cut(s) 43, 94, 322, 598, 707, 746, 843
Alw26I GTCTC 2 cut(s) 482, 772
AlwI GGATC 2 cut(s) 410, 952
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 2 cut(s) 614, 781
ApeKI GCWGC 3 cut(s) 288, 319, 808
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AsiGI ACCGGT 1 cut(s) 772
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 4 cut(s) 475, 650, 762, 787
BbsI GAAGAC 2 cut(s) 477, 661
BbvI GCAGC 3 cut(s) 275, 331, 820
BccI CCATC 4 cut(s) 272, 394, 629, 792
BcoDI GTCTC 2 cut(s) 482, 772
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 4 cut(s) 251, 289, 320, 809
BlsI GCNGC 4 cut(s) 252, 290, 321, 810
BmcAI AGTACT 1 cut(s) 938
BmiI GGNNCC 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 477, 661
BpuEI CTTGAG 1 cut(s) 344
BsaWI WCCGGW 2 cut(s) 80, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 779
Bse118I RCCGGY 1 cut(s) 772
Bse1I ACTGG 2 cut(s) 159, 341
Bse3DI GCAATG 3 cut(s) 28, 413, 1040
BseGI GGATG 3 cut(s) 283, 528, 640
BseLI CCNNNNNNNGG 2 cut(s) 80, 779
BseMI GCAATG 3 cut(s) 28, 413, 1040
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 159, 341
BseRI GAGGAG 3 cut(s) 398, 410, 449
BseXI GCAGC 3 cut(s) 275, 331, 820
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 616, 783
BshTI ACCGGT 1 cut(s) 772
BsiSI CCGG 2 cut(s) 81, 773
BslI CCNNNNNNNGG 2 cut(s) 80, 779
BsmAI GTCTC 2 cut(s) 482, 772
BsnI GGCC 2 cut(s) 616, 783
Bsp143I GATC 2 cut(s) 415, 957
BspACI CCGC 1 cut(s) 250
BspANI GGCC 2 cut(s) 616, 783
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 410, 952
BsrDI GCAATG 3 cut(s) 28, 413, 1040
BsrFI RCCGGY 1 cut(s) 772
BsrI ACTGG 2 cut(s) 159, 341
BssAI RCCGGY 1 cut(s) 772
BssMI GATC 2 cut(s) 415, 957
Bst4CI ACNGT 3 cut(s) 206, 476, 484
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 3 cut(s) 90, 426, 620
BstF5I GGATG 3 cut(s) 283, 528, 640
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 2 cut(s) 418, 960
BstMAI GTCTC 2 cut(s) 482, 772
BstMBI GATC 2 cut(s) 415, 957
BstMWI GCNNNNNNNGC 2 cut(s) 752, 1045
BstNSI RCATGY 2 cut(s) 139, 731
BstV1I GCAGC 3 cut(s) 275, 331, 820
BstV2I GAAGAC 2 cut(s) 477, 661
BsuRI GGCC 2 cut(s) 616, 783
BtsCI GGATG 3 cut(s) 283, 528, 640
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 3 cut(s) 260, 480, 1016
Cac8I GCNNGC 1 cut(s) 931
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 772
Csp6I GTAC 2 cut(s) 871, 937
CspAI ACCGGT 1 cut(s) 772
CviAII CATG 5 cut(s) 136, 728, 801, 829, 989
CviQI GTAC 2 cut(s) 871, 937
DdeI CTNAG 3 cut(s) 90, 426, 620
DpnI GATC 2 cut(s) 417, 959
DpnII GATC 2 cut(s) 415, 957
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco147I AGGCCT 1 cut(s) 616
Eco47III AGCGCT 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 254
FaeI CATG 5 cut(s) 139, 731, 804, 832, 992
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 5 cut(s) 135, 727, 800, 828, 988
Fnu4HI GCNGC 4 cut(s) 251, 289, 320, 809
FokI GGATG 3 cut(s) 290, 535, 647
Fsp4HI GCNGC 4 cut(s) 251, 289, 320, 809
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 251, 289, 320, 809
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 616, 783
HapII CCGG 2 cut(s) 81, 773
HhaI GCGC 1 cut(s) 307
Hin1II CATG 5 cut(s) 139, 731, 804, 832, 992
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HinfI GANTC 6 cut(s) 86, 155, 548, 652, 699, 718
HpaII CCGG 2 cut(s) 81, 773
HphI GGTGA 4 cut(s) 475, 650, 762, 787
Hpy166II GTNNAC 1 cut(s) 880
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 576, 649
Hpy8I GTNNAC 1 cut(s) 880
HpyAV CCTTC 3 cut(s) 523, 816, 901
HpyCH4III ACNGT 3 cut(s) 206, 476, 484
HpyCH4V TGCA 9 cut(s) 4, 21, 319, 406, 489, 755, 992, 1016, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 1045
HpyF3I CTNAG 3 cut(s) 90, 426, 620
Hsp92II CATG 5 cut(s) 139, 731, 804, 832, 992
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 415, 957
LmnI GCTCC 3 cut(s) 302, 805, 848
LpnPI CCDG 9 cut(s) 94, 172, 269, 322, 426, 432, 765, 786, 969
Lsp1109I GCAGC 3 cut(s) 275, 331, 820
MaeIII GTNAC 3 cut(s) 124, 440, 775
MalI GATC 2 cut(s) 417, 959
MboI GATC 2 cut(s) 415, 957
MboII GAAGA 4 cut(s) 247, 370, 482, 661
MluCI AATT 3 cut(s) 456, 601, 861
MlyI GAGTC 3 cut(s) 95, 557, 712
MmeI TCCRAC 2 cut(s) 173, 255
MseI TTAA 3 cut(s) 600, 605, 657
MslI CAYNNNNRTG 1 cut(s) 726
MspI CCGG 2 cut(s) 81, 773
MwoI GCNNNNNNNGC 2 cut(s) 752, 1045
NdeII GATC 2 cut(s) 415, 957
NlaIII CATG 5 cut(s) 139, 731, 804, 832, 992
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 775
NspI RCATGY 2 cut(s) 139, 731
PceI AGGCCT 1 cut(s) 616
PciI ACATGT 1 cut(s) 135
PfeI GAWTC 3 cut(s) 155, 652, 699
PinAI ACCGGT 1 cut(s) 772
PkrI GCNGC 4 cut(s) 252, 290, 321, 810
PleI GAGTC 3 cut(s) 94, 556, 712
PpsI GAGTC 3 cut(s) 94, 556, 712
PscI ACATGT 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 71
RsaI GTAC 2 cut(s) 872, 938
RsaNI GTAC 2 cut(s) 871, 937
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 3 cut(s) 600, 605, 657
SatI GCNGC 4 cut(s) 251, 289, 320, 809
Sau3AI GATC 2 cut(s) 415, 957
ScaI AGTACT 1 cut(s) 938
SchI GAGTC 3 cut(s) 95, 557, 712
SgrAI CRCCGGYG 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 456, 601, 861
SseBI AGGCCT 1 cut(s) 616
SsiI CCGC 1 cut(s) 250
SspI AATATT 1 cut(s) 58
StuI AGGCCT 1 cut(s) 616
TaaI ACNGT 3 cut(s) 206, 476, 484
TaqI TCGA 3 cut(s) 184, 575, 915
TasI AATT 3 cut(s) 456, 601, 861
TatI WGTACW 2 cut(s) 870, 936
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 3 cut(s) 155, 652, 699
Tru1I TTAA 3 cut(s) 600, 605, 657
Tru9I TTAA 3 cut(s) 600, 605, 657
TscAI CASTG 3 cut(s) 260, 487, 1016
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 3 cut(s) 288, 319, 808
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 5 cut(s) 542, 573, 845, 900, 911
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 3 cut(s) 260, 487, 1016
XceI RCATGY 2 cut(s) 139, 731
ZrmI AGTACT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.