FvH4_6g40080

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Reverse (-)
31663763 .. 31664678
916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40080.t1

Sequence Viewer

Length: 567 bp
ATGCGTTCATGGAAGAAGCTTGAAAGCCTGACCAAGTATTATGACGTGTATTCTCTTGCGTATTTAGTTAACGAAACTCTACATTGGGTATTGGAAGCCGAAGAACACGATGAGCAACGCTTCCCTTCAAAAATAGTGTCATTTGATTTAGCCGAGGAGAAATTTCATGAGATTGCATTTCCCTATCCTCCAGGAGTAGACAGGCGTGAATTGCTGGCCGACGTTGGAATTCTCGGTAACTGTTTAACCCTATACTTTCAAACCATGTGTGGCCGAGCTGGGTGCGAGTTTAAGATGTGTGTAATGAAGGAATATGGAGTCAAGGATTGCTGGACTCAAATCATAGATCTACCTTCAGGGATTCTAGGTGAAGAGTATACATGCATAACATGCATTTCTGTGAATGGTGAACTTTTGATGCGTATAGGGAATGGAGGCCCCTTGGGAATATATAATCCCATGGAAAAAACATTTAGGAATCTGTTTGATGATTTTGATGTACCAGGTACTTACATAGAGAGCTTAGTTTCACCATTAATTGGCAGTACTAATGGTGCAAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

189

Amino Acids

21.31

Weight (kDa)

4.69

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 539
AccI GTMKAC 2 cut(s) 198, 377
AcoI YGGCCR 2 cut(s) 216, 271
AcsI RAATTY 2 cut(s) 161, 228
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 501, 508, 547
AfiI CCNNNNNNNGG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 3 cut(s) 23, 129, 260
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 190, 502
AluBI AGCT 4 cut(s) 19, 278, 522, 561
AluI AGCT 4 cut(s) 19, 278, 522, 561
AoxI GGCC 3 cut(s) 216, 271, 436
ApoI RAATTY 2 cut(s) 161, 228
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AseI ATTAAT 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 380, 419, 522
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 2 cut(s) 192, 504
BfaI CTAG 1 cut(s) 365
BglII AGATCT 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 192, 504
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 192, 504
BmsI GCATC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 153, 441, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 539
BseBI CCWGG 2 cut(s) 192, 504
BseDI CCNNGG 3 cut(s) 153, 441, 459
BseLI CCNNNNNNNGG 1 cut(s) 539
BseRI GAGGAG 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 3 cut(s) 218, 273, 438
BslI CCNNNNNNNGG 1 cut(s) 539
BsnI GGCC 3 cut(s) 218, 273, 438
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 459
BspANI GGCC 3 cut(s) 218, 273, 438
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 153, 441, 459
BssMI GATC 1 cut(s) 346
BssNAI GTATAC 1 cut(s) 378
BssT1I CCWWGG 2 cut(s) 441, 459
Bst1107I GTATAC 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 192, 504
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 216, 559
BstDEI CTNAG 1 cut(s) 523
BstDSI CCRYGG 1 cut(s) 459
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 211, 390
BstNI CCWGG 2 cut(s) 192, 504
BstNSI RCATGY 2 cut(s) 384, 393
BstSCI CCNGG 2 cut(s) 190, 502
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BstZ17I GTATAC 1 cut(s) 378
BsuRI GGCC 3 cut(s) 218, 273, 438
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 216, 559
CciI TCATGA 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 437
CsiI ACCWGGT 1 cut(s) 502
Csp6I GTAC 3 cut(s) 500, 507, 546
CviAII CATG 6 cut(s) 9, 167, 265, 381, 390, 460
CviQI GTAC 3 cut(s) 500, 507, 546
DdeI CTNAG 1 cut(s) 523
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 2 cut(s) 216, 271
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 2 cut(s) 441, 459
Eco57I CTGAAG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 190, 502
EcoT14I CCWWGG 2 cut(s) 441, 459
EcoT22I ATGCAT 2 cut(s) 386, 395
ErhI CCWWGG 2 cut(s) 441, 459
FaeI CATG 6 cut(s) 12, 170, 268, 384, 393, 463
FatI CATG 6 cut(s) 8, 166, 264, 380, 389, 459
FblI GTMKAC 2 cut(s) 198, 377
FspBI CTAG 1 cut(s) 365
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 3 cut(s) 218, 273, 438
Hin1II CATG 6 cut(s) 12, 170, 268, 384, 393, 463
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 2 cut(s) 17, 559
HinfI GANTC 4 cut(s) 318, 334, 361, 478
HpaI GTTAAC 1 cut(s) 70
HphI GGTGA 3 cut(s) 380, 419, 522
Hpy166II GTNNAC 4 cut(s) 70, 199, 378, 410
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 4 cut(s) 70, 199, 378, 410
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 135, 301, 363
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 45, 222
HpyCH4V TGCA 4 cut(s) 176, 384, 393, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 390
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 2 cut(s) 45, 222
Hsp92II CATG 6 cut(s) 12, 170, 268, 384, 393, 463
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 346
LweI GCATC 1 cut(s) 408
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 1 cut(s) 365
MaeII ACGT 2 cut(s) 45, 222
MaeIII GTNAC 1 cut(s) 236
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 3 cut(s) 25, 113, 383
MflI RGATCY 1 cut(s) 346
MluCI AATT 4 cut(s) 161, 209, 228, 537
MlyI GAGTC 2 cut(s) 327, 328
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 3 cut(s) 148, 198, 428
Mph1103I ATGCAT 2 cut(s) 386, 395
MseI TTAA 4 cut(s) 69, 245, 291, 536
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 192, 504
MvaI CCWGG 2 cut(s) 192, 504
MwoI GCNNNNNNNGC 2 cut(s) 211, 390
NcoI CCATGG 1 cut(s) 459
NdeII GATC 1 cut(s) 346
NlaIII CATG 6 cut(s) 12, 170, 268, 384, 393, 463
NlaIV GGNNCC 1 cut(s) 439
NmeAIII GCCGAG 2 cut(s) 178, 299
NsiI ATGCAT 2 cut(s) 386, 395
NspI RCATGY 2 cut(s) 384, 393
PagI TCATGA 1 cut(s) 166
PfeI GAWTC 2 cut(s) 361, 478
PflMI CCANNNNNTGG 1 cut(s) 539
PfoI TCCNGGA 1 cut(s) 190
PleI GAGTC 2 cut(s) 326, 328
PpsI GAGTC 2 cut(s) 326, 328
PshBI ATTAAT 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 190, 502
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 2 cut(s) 190, 502
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 437
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 3 cut(s) 501, 508, 547
RsaNI GTAC 3 cut(s) 500, 507, 546
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 4 cut(s) 69, 245, 291, 536
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 327, 328
ScrFI CCNGG 2 cut(s) 192, 504
SetI ASST 9 cut(s) 21, 48, 225, 280, 355, 370, 508, 524, 563
SexAI ACCWGGT 1 cut(s) 502
SfaNI GCATC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 4 cut(s) 161, 209, 228, 537
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 190, 502
StyI CCWWGG 2 cut(s) 441, 459
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 2 cut(s) 48, 225
TasI AATT 4 cut(s) 161, 209, 228, 537
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 2 cut(s) 361, 478
Tru1I TTAA 4 cut(s) 69, 245, 291, 536
Tru9I TTAA 4 cut(s) 69, 245, 291, 536
TspDTI ATGAA 2 cut(s) 155, 320
Van91I CCANNNNNTGG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 536
XapI RAATTY 2 cut(s) 161, 228
XceI RCATGY 2 cut(s) 384, 393
XmiI GTMKAC 2 cut(s) 198, 377
XspI CTAG 1 cut(s) 365
ZrmI AGTACT 1 cut(s) 547
Zsp2I ATGCAT 2 cut(s) 386, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.