RchiOBHm_Chr1g0347361

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000113
Physical Location & Seq
Reverse (-)
39988271 .. 39990968
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57348

Sequence Viewer

Length: 873 bp
ATGCGATTTCGCTGCGTCTGCAAGCCATGGCGTGCTCTCATCTCCCAGTCTCACTTTGTCACCAAGCACTTCAACTACGCAAGCAAAGGCTTCACCGAGAACACCTCCAGCCTCTTGATATCAATGAATCCCTACATATACTGTGAAGCATCCAAGGATTTGTCCCTTGACTGTGAAGCATTGAAGGAGTTGAAGGATGATGGAGATGCTCATCTTGCAATTAGAAAGCTCGAGTTTCCGGTAATGTTCCCTGATTCAAGTATTAGAAAAATTGTGGGTTCTTGCAATGGCCTGATTTGTGTAGAAATTGACCAGAAAGACATGGTGTTATGGAACCCTTGTACTGGACAATCCAATTTGTTGCCAAAACCTACTGGTCATGTCACTTTGAAGCTTTGCGGAGTTGGTTATGATCTTACTATGAAGTTTTGCGGATTTGGTTATGATCTTACTAATGATGACTATAAGGTAGTGACAGGGTACAGTCATAGAGTTAGGGGTTCTGAGGAAACCGTGGTTCAGGTCTTTAGTTTCAAATCAGGTTCATGGAGGACCCATAAGGGTCTTAGTTACTTTTGCTTGGAAGGGCCAGGGTGCTTGTCAAATGGTGCTCTGCATTGGGCATTGACCATATTCAATGATTTTCGTCAAACAGATTCAAGGACTATCTCTTTTGATTTAGCAGAGGAAAAGTTTCAGGAGATGATTCCGTTGCCCTCTCAGGCTGGTTTTAGATGCCACTTTATTCCTGGAGAATGTCGTCGTGTATATACATATGGCTTTCTACACAATGAGATCATCAGGCTTAAAATATGGATGATGAAGGAATATGGGGTCCAGGATTCGTGGACTGAAGTTGCTTCTTTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

290

Amino Acids

33.08

Weight (kDa)

6.74

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 78 - 250 2.8e-19 F-box associated beta propeller domain
FBA_1 PF07734 85 - 288 6e-23 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 92 - 283 3.7e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 399, 432
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 2 cut(s) 343, 482
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 8 cut(s) 73, 184, 193, 258, 391, 535, 637, 660
AjnI CCWGG 3 cut(s) 589, 748, 837
AluBI AGCT 2 cut(s) 229, 394
AluI AGCT 2 cut(s) 229, 394
Alw21I GWGCWC 2 cut(s) 37, 613
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 289, 587
ApeKI GCWGC 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 693
AspS9I GGNCC 3 cut(s) 552, 587, 835
AsuHPI GGTGA 2 cut(s) 52, 85
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 552, 835
Bbv12I GWGCWC 2 cut(s) 37, 613
BccI CCATC 1 cut(s) 194
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 591, 750, 839
BcoDI GTCTC 1 cut(s) 54
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 3 cut(s) 591, 750, 839
Bme18I GGWCC 2 cut(s) 552, 835
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 552, 587, 835
BmiI GGNNCC 3 cut(s) 335, 554, 836
BmrFI CCNGG 3 cut(s) 591, 750, 839
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 3 cut(s) 158, 196, 725
BmuI ACTGGG 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BpmI CTGGAG 2 cut(s) 91, 771
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 26, 153, 513, 590
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 3 cut(s) 46, 349, 379
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 3 cut(s) 591, 750, 839
BseDI CCNNGG 4 cut(s) 26, 153, 513, 590
BseGI GGATG 3 cut(s) 149, 202, 822
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 495, 734
BseNI ACTGG 3 cut(s) 46, 349, 379
BshFI GGCC 2 cut(s) 291, 589
BsiHKAI GWGCWC 2 cut(s) 37, 613
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 2 cut(s) 291, 589
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 37, 613
Bsp143I GATC 3 cut(s) 412, 445, 795
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 2 cut(s) 399, 432
BspANI GGCC 2 cut(s) 291, 589
BspCNI CTCAG 2 cut(s) 496, 733
BspLI GGNNCC 3 cut(s) 335, 554, 836
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 3 cut(s) 46, 349, 379
BssECI CCNNGG 4 cut(s) 26, 153, 513, 590
BssMI GATC 3 cut(s) 412, 445, 795
BssT1I CCWWGG 2 cut(s) 26, 153
Bst2UI CCWGG 3 cut(s) 591, 750, 839
Bst4CI ACNGT 4 cut(s) 143, 173, 485, 514
BstC8I GCNNGC 3 cut(s) 23, 33, 82
BstDEI CTNAG 3 cut(s) 504, 566, 720
BstDSI CCRYGG 2 cut(s) 26, 513
BstF5I GGATG 3 cut(s) 149, 202, 822
BstKTI GATC 3 cut(s) 415, 448, 798
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 412, 445, 795
BstMWI GCNNNNNNNGC 2 cut(s) 18, 215
BstNI CCWGG 3 cut(s) 591, 750, 839
BstSCI CCNGG 3 cut(s) 589, 748, 837
BsuRI GGCC 2 cut(s) 291, 589
BtgI CCRYGG 2 cut(s) 26, 513
BtsCI GGATG 3 cut(s) 149, 202, 822
Cac8I GCNNGC 3 cut(s) 23, 33, 82
Cfr13I GGNCC 3 cut(s) 552, 587, 835
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 342, 481
CviAII CATG 4 cut(s) 27, 322, 380, 546
CviQI GTAC 2 cut(s) 342, 481
DdeI CTNAG 3 cut(s) 504, 566, 720
DpnI GATC 3 cut(s) 414, 447, 797
DpnII GATC 3 cut(s) 412, 445, 795
Eco130I CCWWGG 2 cut(s) 26, 153
Eco32I GATATC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 552, 835
Eco57I CTGAAG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 552
EcoRII CCWGG 3 cut(s) 589, 748, 837
EcoRV GATATC 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 26, 153
ErhI CCWWGG 2 cut(s) 26, 153
FaeI CATG 4 cut(s) 30, 325, 383, 549
FaqI GGGAC 1 cut(s) 148
FatI CATG 4 cut(s) 26, 321, 379, 545
FauNDI CATATG 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 3 cut(s) 136, 209, 829
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 2 cut(s) 91, 771
HaeIII GGCC 2 cut(s) 291, 589
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 4
Hin1II CATG 4 cut(s) 30, 325, 383, 549
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 5 cut(s) 127, 254, 656, 706, 842
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 52, 85
Hpy166II GTNNAC 1 cut(s) 849
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 2 cut(s) 115, 698
Hpy8I GTNNAC 1 cut(s) 849
Hpy99I CGWCG 1 cut(s) 765
HpyAV CCTTC 4 cut(s) 178, 187, 578, 817
HpyCH4III ACNGT 4 cut(s) 143, 173, 485, 514
HpyCH4V TGCA 4 cut(s) 21, 218, 285, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 215
HpyF3I CTNAG 3 cut(s) 504, 566, 720
Hsp92II CATG 4 cut(s) 30, 325, 383, 549
Kzo9I GATC 3 cut(s) 412, 445, 795
LweI GCATC 3 cut(s) 158, 196, 725
MaeIII GTNAC 4 cut(s) 58, 382, 472, 569
MalI GATC 3 cut(s) 414, 447, 797
MboI GATC 3 cut(s) 412, 445, 795
MhlI GDGCHC 2 cut(s) 37, 613
MluCI AATT 4 cut(s) 219, 270, 306, 355
MnlI CCTC 6 cut(s) 115, 122, 499, 543, 679, 727
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 1 cut(s) 807
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 591, 750, 839
MvaI CCWGG 3 cut(s) 591, 750, 839
MwoI GCNNNNNNNGC 2 cut(s) 18, 215
NcoI CCATGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 775
NdeII GATC 3 cut(s) 412, 445, 795
NlaIII CATG 4 cut(s) 30, 325, 383, 549
NlaIV GGNNCC 3 cut(s) 335, 554, 836
NmuCI GTSAC 3 cut(s) 58, 382, 472
PaeR7I CTCGAG 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 5 cut(s) 127, 254, 656, 706, 842
PfoI TCCNGGA 2 cut(s) 748, 837
PkrI GCNGC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 589, 748, 837
PspGI CCWGG 3 cut(s) 589, 748, 837
PspN4I GGNNCC 3 cut(s) 335, 554, 836
PspPI GGNCC 3 cut(s) 552, 587, 835
PspPPI RGGWCCY 1 cut(s) 552
PspXI VCTCGAGB 1 cut(s) 230
RsaI GTAC 2 cut(s) 343, 482
RsaNI GTAC 2 cut(s) 342, 481
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 3 cut(s) 412, 445, 795
Sau96I GGNCC 3 cut(s) 552, 587, 835
ScrFI CCNGG 3 cut(s) 591, 750, 839
SduI GDGCHC 2 cut(s) 37, 613
SetI ASST 7 cut(s) 107, 231, 373, 396, 471, 525, 544
SfaNI GCATC 3 cut(s) 158, 196, 725
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 2 cut(s) 552, 835
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 219, 270, 306, 355
SsiI CCGC 2 cut(s) 399, 432
StyD4I CCNGG 3 cut(s) 589, 748, 837
StyI CCWWGG 2 cut(s) 26, 153
TaaI ACNGT 4 cut(s) 143, 173, 485, 514
TaqI TCGA 1 cut(s) 231
TasI AATT 4 cut(s) 219, 270, 306, 355
TatI WGTACW 1 cut(s) 341
TfiI GAWTC 5 cut(s) 127, 254, 656, 706, 842
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TseFI GTSAC 3 cut(s) 58, 382, 472
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 3 cut(s) 58, 382, 472
TspDTI ATGAA 4 cut(s) 140, 437, 534, 836
TspGWI ACGGA 1 cut(s) 699
VpaK11BI GGWCC 2 cut(s) 552, 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XhoI CTCGAG 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.