RLG00000021699

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000113
Physical Location & Seq
Forward (+)
77339297 .. 77340751
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021699

Sequence Viewer

Length: 999 bp
ATGGCGGAGGACCGCGGTAGTGGTGGTGTGGTTAAGCGAATTCGGAGTGACTACTTCGACGAAGATATAGTTTCCGAGATACTGGCAAGGCTTCCGGTCAGATCTTTACTTCGATTCCGCTGGGTGGGGATTGTCGTATGGAACCCTTGCACCGGAGAATACAAGGTGCTACCAAATCCTCCTACAGATTGCCATCCTTCAGATTTTTATGGGTTTGGCTATGACTCCACAACTGATGATTACAAGATCATAAGGGGGCGTAGGTCTTCGGAGGAAGCCCTGATTCACGTGTATACGCTGAAAACGGGCTCATGGAGAACCATTCGGGATCACGATTATGCCGAATTTTGGGGTAAAGGGTGCTTATTCAATGGAGCTCTACATTGGCTTGTGCCTAGTTATCAAGGATCAAGAATTATGTCCTTTTTTGTGGCGGAGGAGAAGTTTGAGGAGACGGTTCCGTTACTGGATGATTATCGTGTTTTTCATGGTGTATTGAATGGTGAAATTTTGATGCATAGGGTTATGTCTGATGATCCTTTTGCGTTTAATGATCCTGATGTGTTTGATGAGGATCTTGATGAGTTGTATTATGAACAACTTATGCAGGATGATCCTCATGTGTTTGATGATGAGCCTGATGTGTTCGATGAGGATCTTGATGAGTTGTTTTATGAACAACTTCTGCAGGATGATCCTGATGTGTTTGATGATGATCCTGGTGTGTTTGATGAGGATCTTGATGAGTTGTATTATGAACAACTTCTGCAGGATGATCCTGATGTGCTTGATGATGATCCTTGTGTGTCTGATGAGGATCTTGATGAGTTGTATTATGAACAACTTATGCAGGATTATAATCAGCAGTGTATGTGGAATGCAGAAAGCCTATTGGTATTAACTAATCAAAAGACCTCAAAGGCTGTTTTTGAAGTTGACTTGGGTTTTGGAGCTGCCACTTACAGGCAGACTTTAGTTTCACCGGTAACAGGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

333

Amino Acids

38.6

Weight (kDa)

4.05

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 43 - 156 1.1e-18 F-box associated beta propeller domain
FBA_3 PF08268 45 - 152 7.7e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AccI GTMKAC 1 cut(s) 293
AccII CGCG 1 cut(s) 15
AciI CCGC 5 cut(s) 5, 13, 15, 118, 434
AcsI RAATTY 3 cut(s) 39, 344, 507
AcuI CTGAAG 1 cut(s) 183
AcvI CACGTG 1 cut(s) 289
AfiI CCNNNNNNNGG 5 cut(s) 124, 152, 348, 963, 989
AflIII ACRYGT 1 cut(s) 288
AgeI ACCGGT 1 cut(s) 982
AgsI TTSAA 3 cut(s) 370, 499, 932
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 2 cut(s) 377, 953
AluI AGCT 2 cut(s) 377, 953
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 446
ApeKI GCWGC 1 cut(s) 953
ApoI RAATTY 3 cut(s) 39, 344, 507
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
AsiGI ACCGGT 1 cut(s) 982
Asp700I GAANNNNTTC 2 cut(s) 681, 762
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 515, 972
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 311, 379
BbrPI CACGTG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 940
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 720
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 3 cut(s) 183, 686, 767
BglII AGATCT 1 cut(s) 101
BisI GCNGC 1 cut(s) 954
BlsI GCNGC 1 cut(s) 955
Bme1390I CCNGG 1 cut(s) 720
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 143, 459
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 289
BsaBI GATNNNNATC 9 cut(s) 192, 474, 573, 654, 714, 735, 795, 816, 858
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 3 cut(s) 94, 152, 982
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 152, 348, 963, 989
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 2 cut(s) 87, 471
Bse8I GATNNNNATC 9 cut(s) 192, 474, 573, 654, 714, 735, 795, 816, 858
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 5 cut(s) 193, 475, 616, 697, 778
BseJI GATNNNNATC 9 cut(s) 192, 474, 573, 654, 714, 735, 795, 816, 858
BseLI CCNNNNNNNGG 5 cut(s) 124, 152, 348, 963, 989
BseNI ACTGG 2 cut(s) 87, 471
BseRI GAGGAG 2 cut(s) 452, 464
BseXI GCAGC 1 cut(s) 940
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 982
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 3 cut(s) 95, 153, 983
BslI CCNNNNNNNGG 5 cut(s) 124, 152, 348, 963, 989
BsmAI GTCTC 1 cut(s) 446
BsmBI CGTCTC 1 cut(s) 446
BsmI GAATGC 1 cut(s) 883
Bsp1286I GDGCHC 2 cut(s) 311, 379
BspACI CCGC 5 cut(s) 5, 13, 15, 118, 434
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 143, 459
BspMAI CTGCAG 2 cut(s) 690, 771
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 2 cut(s) 87, 471
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 1 cut(s) 13
BssNAI GTATAC 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 5 cut(s) 193, 475, 616, 697, 778
BstFNI CGCG 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 718
BstSFI CTRYAG 3 cut(s) 183, 686, 767
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 940
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 5 cut(s) 101, 574, 655, 736, 817
BstYI RGATCY 5 cut(s) 101, 574, 655, 736, 817
BstZ17I GTATAC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 5 cut(s) 193, 475, 616, 697, 778
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 1 cut(s) 872
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 16
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 3 cut(s) 312, 488, 620
EciI GGCGGA 2 cut(s) 20, 449
Ecl136II GAGCTC 1 cut(s) 377
Eco24I GRGCYC 2 cut(s) 311, 379
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 519
EcoT38I GRGCYC 2 cut(s) 311, 379
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 3 cut(s) 315, 491, 623
FatI CATG 3 cut(s) 311, 487, 619
FauNDI CATATG 1 cut(s) 995
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 954
FokI GGATG 5 cut(s) 180, 482, 623, 704, 785
FriOI GRGCYC 2 cut(s) 311, 379
Fsp4HI GCNGC 1 cut(s) 954
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 954
GsaI CCCAGC 1 cut(s) 124
HapII CCGG 3 cut(s) 95, 153, 983
Hin1II CATG 3 cut(s) 315, 491, 623
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HinfI GANTC 3 cut(s) 114, 224, 283
HpaII CCGG 3 cut(s) 95, 153, 983
HphI GGTGA 2 cut(s) 515, 972
Hpy166II GTNNAC 2 cut(s) 294, 937
Hpy188I TCNGA 7 cut(s) 45, 76, 101, 202, 271, 532, 811
Hpy8I GTNNAC 2 cut(s) 294, 937
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 7 cut(s) 150, 517, 607, 688, 769, 850, 881
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 315, 491, 623
KspI CCGCGG 1 cut(s) 16
LmnI GCTCC 2 cut(s) 374, 950
Lsp1109I GCAGC 1 cut(s) 940
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 3 cut(s) 47, 462, 985
MboII GAAGA 2 cut(s) 74, 258
MflI RGATCY 5 cut(s) 101, 574, 655, 736, 817
MhlI GDGCHC 2 cut(s) 311, 379
MluCI AATT 4 cut(s) 39, 344, 414, 507
MlyI GAGTC 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 519
MroXI GAANNNNTTC 2 cut(s) 681, 762
MseI TTAA 3 cut(s) 33, 549, 899
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 2 cut(s) 15, 120
MspI CCGG 3 cut(s) 95, 153, 983
MspR9I CCNGG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 15
NdeI CATATG 1 cut(s) 995
NlaIII CATG 3 cut(s) 315, 491, 623
NlaIV GGNNCC 2 cut(s) 143, 459
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 2 cut(s) 681, 762
PfeI GAWTC 2 cut(s) 114, 283
PinAI ACCGGT 1 cut(s) 982
PkrI GCNGC 1 cut(s) 955
PleI GAGTC 1 cut(s) 218
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
PpsI GAGTC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 289
PsiI TTATAA 1 cut(s) 858
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 718
PspCI CACGTG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 2 cut(s) 143, 459
PspPI GGNCC 1 cut(s) 10
PstI CTGCAG 2 cut(s) 690, 771
PsuI RGATCY 5 cut(s) 101, 574, 655, 736, 817
RseI CAYNNNNRTG 1 cut(s) 336
SacI GAGCTC 1 cut(s) 379
SacII CCGCGG 1 cut(s) 16
SaqAI TTAA 3 cut(s) 33, 549, 899
SatI GCNGC 1 cut(s) 954
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 720
SduI GDGCHC 2 cut(s) 311, 379
SetI ASST 6 cut(s) 168, 266, 291, 379, 917, 955
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 3 cut(s) 183, 686, 767
Sfr303I CCGCGG 1 cut(s) 16
SgrBI CCGCGG 1 cut(s) 16
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 4 cut(s) 39, 344, 414, 507
SsiI CCGC 5 cut(s) 5, 13, 15, 118, 434
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 718
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 57, 112, 648
TasI AATT 4 cut(s) 39, 344, 414, 507
TfiI GAWTC 2 cut(s) 114, 283
Tru1I TTAA 3 cut(s) 33, 549, 899
Tru9I TTAA 3 cut(s) 33, 549, 899
TscAI CASTG 1 cut(s) 872
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 953
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 5 cut(s) 476, 609, 690, 771, 852
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 3 cut(s) 39, 344, 507
XmiI GTMKAC 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 681, 762
XspI CTAG 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.