Rmu_co8343471.1_g000001

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8343471.1
Physical Location & Seq
Forward (+)
55 .. 831
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8343471.1_g000001.1.cds

Sequence Viewer

Length: 777 bp
atggtgttatggaacccttgtactggacaatccaatttgttgccaaaacctaccgatcattgcattccgcagtttcgcggatttggttttaattccactatgaagttttacggatttggttatgattccactaatgatgattataaggtagtgagagggtacaattacagagttagggattctgaggaaaccgtggttcaggtctctagtttaaaatcaggttcatggaggacccataagggtcttggttacttttgcttggaagggccagggtgcttgtcaaatggtgctctgcattgggcattgaccatattctatgattttcgtccaacagattcaaggactatctcttttgatttagcagaggaaaagtttcaggagatgattccattgccctctcaggctggttttagatacagccttattcctggagattgtcgtggtgtatatacatatggctttctacacaatgagatcatcaggcttagaatatgggtgatgaaggaatatggggtccaggattcgtggactgaagttgcttctttagatattttacgtaaagattgtcaattctcactcgtgatgcctctgtgcatattagagaatggtgaaggttttatcgccgagagttgtgattttcagtccttggtattatatagcttcaaggaacagacatttaggaatgttgttagggccgacaacaaatgccaatttggtgcagtcgtttacagggagactttagtttcacccgtcagcagtggtattgcagacatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

258

Amino Acids

29.41

Weight (kDa)

5.63

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 68, 78
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 2 cut(s) 22, 161
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 2 cut(s) 339, 664
AjnI CCWGG 3 cut(s) 268, 427, 516
AluBI AGCT 1 cut(s) 660
AluI AGCT 1 cut(s) 660
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 208, 728
AoxI GGCC 2 cut(s) 266, 693
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 4 cut(s) 231, 266, 514, 693
AsuHPI GGTGA 3 cut(s) 508, 620, 738
AvaII GGWCC 2 cut(s) 231, 514
BauI CACGAG 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 292
BciT130I CCWGG 3 cut(s) 270, 429, 518
BcoDI GTCTC 2 cut(s) 208, 728
BfaI CTAG 1 cut(s) 207
Bme1390I CCNGG 3 cut(s) 270, 429, 518
Bme18I GGWCC 2 cut(s) 231, 514
BmgT120I GGNCC 4 cut(s) 231, 266, 514, 693
BmiI GGNNCC 3 cut(s) 14, 233, 515
BmrFI CCNGG 3 cut(s) 270, 429, 518
BmsI GCATC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 192, 269, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 2 cut(s) 58, 389
BseBI CCWGG 3 cut(s) 270, 429, 518
BseDI CCNNGG 3 cut(s) 192, 269, 645
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 2 cut(s) 58, 389
BseMII CTCAG 2 cut(s) 174, 413
BseNI ACTGG 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 268, 695
BsiHKAI GWGCWC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 208, 728
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 268, 695
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 55, 474
BspACI CCGC 2 cut(s) 68, 78
BspANI GGCC 2 cut(s) 268, 695
BspCNI CTCAG 2 cut(s) 175, 412
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 14, 233, 515
BspTNI GGTCTC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 58, 389
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 192, 269, 645
BssMI GATC 2 cut(s) 55, 474
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 3 cut(s) 270, 429, 518
Bst4CI ACNGT 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 557
BstDEI CTNAG 3 cut(s) 183, 399, 485
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 58, 477
BstMAI GTCTC 2 cut(s) 208, 728
BstMBI GATC 2 cut(s) 55, 474
BstNI CCWGG 3 cut(s) 270, 429, 518
BstSCI CCNGG 3 cut(s) 268, 427, 516
BstSNI TACGTA 1 cut(s) 557
BstUI CGCG 1 cut(s) 78
BsuRI GGCC 2 cut(s) 268, 695
BtgI CCRYGG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 763
BtsIMutI CAGTG 1 cut(s) 763
Cfr13I GGNCC 4 cut(s) 231, 266, 514, 693
Csp6I GTAC 2 cut(s) 21, 160
CviAII CATG 1 cut(s) 225
CviJI RGCY 7 cut(s) 268, 404, 420, 459, 484, 660, 695
CviKI_1 RGCY 7 cut(s) 268, 404, 420, 459, 484, 660, 695
CviQI GTAC 2 cut(s) 21, 160
DdeI CTNAG 3 cut(s) 183, 399, 485
DpnI GATC 2 cut(s) 57, 476
DpnII GATC 2 cut(s) 55, 474
DraI TTTAAA 1 cut(s) 213
Eco105I TACGTA 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 208
Eco47I GGWCC 2 cut(s) 231, 514
Eco57I CTGAAG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 268, 427, 516
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 1 cut(s) 228
FatI CATG 1 cut(s) 224
FauNDI CATATG 1 cut(s) 454
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 268, 695
Hin1II CATG 1 cut(s) 228
HinfI GANTC 5 cut(s) 125, 179, 335, 385, 521
HphI GGTGA 3 cut(s) 508, 620, 738
Hpy166II GTNNAC 2 cut(s) 528, 727
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 377, 580
Hpy8I GTNNAC 2 cut(s) 528, 727
HpyAV CCTTC 3 cut(s) 257, 496, 605
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 5 cut(s) 63, 295, 594, 719, 767
HpyF3I CTNAG 3 cut(s) 183, 399, 485
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 1 cut(s) 228
Kzo9I GATC 2 cut(s) 55, 474
LweI GCATC 1 cut(s) 573
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 57, 476
MboI GATC 2 cut(s) 55, 474
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 5 cut(s) 34, 91, 163, 569, 710
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 6 cut(s) 149, 178, 222, 358, 406, 597
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 90, 212
MspR9I CCNGG 3 cut(s) 270, 429, 518
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 3 cut(s) 270, 429, 518
MvnI CGCG 1 cut(s) 78
NdeI CATATG 1 cut(s) 454
NdeII GATC 2 cut(s) 55, 474
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 3 cut(s) 14, 233, 515
NmeAIII GCCGAG 1 cut(s) 649
PctI GAATGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 5 cut(s) 125, 179, 335, 385, 521
PfoI TCCNGGA 2 cut(s) 427, 516
Ppu21I YACGTR 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 231
PsiI TTATAA 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 268, 427, 516
PspGI CCWGG 3 cut(s) 268, 427, 516
PspN4I GGNNCC 3 cut(s) 14, 233, 515
PspPI GGNCC 4 cut(s) 231, 266, 514, 693
PspPPI RGGWCCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 22, 161
RsaNI GTAC 2 cut(s) 21, 160
SaqAI TTAA 2 cut(s) 90, 212
Sau3AI GATC 2 cut(s) 55, 474
Sau96I GGNCC 4 cut(s) 231, 266, 514, 693
ScrFI CCNGG 3 cut(s) 270, 429, 518
SduI GDGCHC 1 cut(s) 292
SetI ASST 7 cut(s) 52, 150, 204, 223, 559, 616, 662
SfaNI GCATC 1 cut(s) 573
SinI GGWCC 2 cut(s) 231, 514
SnaBI TACGTA 1 cut(s) 557
Sse9I AATT 5 cut(s) 34, 91, 163, 569, 710
SsiI CCGC 2 cut(s) 68, 78
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 268, 427, 516
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 559
TasI AATT 5 cut(s) 34, 91, 163, 569, 710
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 5 cut(s) 125, 179, 335, 385, 521
Tru1I TTAA 2 cut(s) 90, 212
Tru9I TTAA 2 cut(s) 90, 212
TscAI CASTG 1 cut(s) 763
TspDTI ATGAA 3 cut(s) 116, 213, 515
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 231, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.